Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0335 ATGGACCCAACTTCCGACACTCCGCCTCCGCCCACTGCCGTCCCTTTCACGGCGGAGCTCAACAACCACGTCTCCTCCACGACTGAAGTTAACTCCATTCCCAGCCACCCGCCGTATGACGAGATGATATACACAGCTATCGGAGCTCTCAAGGAGAAAAATGGGTCGAGCAAGCGTGCCATAGGAAAGTACATCCAGCAAGTGTACAAGAACCTTCCAACCACTCACTCTGCTCTTCTCACTCACCACCTCAACCGTTTGAGATCAGTTAACCTTCTAGTCATGGTCAAAAAATCTTATAAGCTCCCTGGATCTGATAATACTCCACCGTCTCCTCCCTCTCAAGTCCAAAAGACCCGTGGCAGACCTCCCAAACTGAAACCCCAGCCCACTGCCGACCCTGTCTGGGCTTCTCTTGGCCTTTCGGATGACCCTACTCCTGCCTCTACTCCTCAATCCCAGAAAAGAGGTCCGGGTCGTCCCAGAAAGATTCTAGGTGTGAGCCCGGGCTCGGCAGTCCCAGCTCGAAGGGGCCGTCCACCAGGCTCTTCTGGAAAATCTAAAGTGTCAAGGAGGGTAGGGCGTCCGCCCAAGCCCAAATCTGTCTCTGGGATCTCCAGCGGGCTCAAACGACGGGGCCGACCCCCTAAAGCCAAATCAAACCTCTCCGTAATTCCCTTTGCAGCTCCGGTTGCTCCTGGTCAGCCCACTATACAGCCCATCATTCCAGCCCCTTCTTTGCCCAATGGGTCCCCCAGGCCCAGAGGACGTCCCAGAAAGATTGTTCCTGCTGGTGGTGCTCCACTGCTCACTCTCAATGCCGACGGTGGTGCAGCCCGTGGCCGTGGACGACCACGCTCAGTCTTTTCTGTGGTTAGGTCGGGTCGGCTCCAGAAGCTCGCAGTTGGAAGGGCTAAGAATCCTGCAAGAAGGCCAGTGGGCCGCCCTAAAGGATCAACTGCTGCTGCAATCAGTGCACATAAGGCTGCTAATGAAGATCTAAGGAAGAAGCTTGAACACTTTCAAACCAAAGTGAAGGAGTCTCTTGGCATGCTTAAACCGTACTTCAACCATGAAAGTCCAGTCACTGCAATTGCAGCAATTCAAGAGCTGGAAGTGCTGTCAACTCTGGATCTTAAGGCAGCATTGAGGGATGAGACTCAGCAACAGCCAGAGCCACTGCCGCAGACACAGGTGTATGAACAGCAATATCCCCCACAGGTGCCGCAACAGCCACAGCTGCAGGAATTTTTTCAGACACATACATCAGCTCAAAGCTAG 1281 0.5402 MDPTSDTPPPPTAVPFTAELNNHVSSTTEVNSIPSHPPYDEMIYTAIGALKEKNGSSKRAIGKYIQQVYKNLPTTHSALLTHHLNRLRSVNLLVMVKKSYKLPGSDNTPPSPPSQVQKTRGRPPKLKPQPTADPVWASLGLSDDPTPASTPQSQKRGPGRPRKILGVSPGSAVPARRGRPPGSSGKSKVSRRVGRPPKPKSVSGISSGLKRRGRPPKAKSNLSVIPFAAPVAPGQPTIQPIIPAPSLPNGSPRPRGRPRKIVPAGGAPLLTLNADGGAARGRGRPRSVFSVVRSGRLQKLAVGRAKNPARRPVGRPKGSTAAAISAHKAANEDLRKKLEHFQTKVKESLGMLKPYFNHESPVTAIAAIQELEVLSTLDLKAALRDETQQQPEPLPQTQVYEQQYPPQVPQQPQLQEFFQTHTSAQS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0335 426 Pfam linker histone H1 and H5 family 36 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra1g0335 426 PANTHER HISTONE H1-LIKE 1 393 - -
Vra1g0335 426 MobiDBLite consensus disorder prediction 101 285 - -
Vra1g0335 426 SMART AT_hook_2 155 167 IPR017956 GO:0003677
Vra1g0335 426 SMART AT_hook_2 279 291 IPR017956 GO:0003677
Vra1g0335 426 SMART AT_hook_2 252 264 IPR017956 GO:0003677
Vra1g0335 426 SMART AT_hook_2 209 221 IPR017956 GO:0003677
Vra1g0335 426 SMART AT_hook_2 190 202 IPR017956 GO:0003677
Vra1g0335 426 SMART AT_hook_2 310 322 IPR017956 GO:0003677
Vra1g0335 426 SMART AT_hook_2 117 129 IPR017956 GO:0003677
Vra1g0335 426 SMART AT_hook_2 174 186 IPR017956 GO:0003677
Vra1g0335 426 Gene3D - 32 113 IPR036388 -
Vra1g0335 426 MobiDBLite consensus disorder prediction 236 252 - -
Vra1g0335 426 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 35 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra1g0335 426 PRINTS AT-hook-like domain signature 117 127 IPR017956 GO:0003677
Vra1g0335 426 PRINTS AT-hook-like domain signature 207 218 IPR017956 GO:0003677
Vra1g0335 426 PRINTS AT-hook-like domain signature 250 260 IPR017956 GO:0003677
Vra1g0335 426 CDD H15 34 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra1g0335 426 PANTHER HISTONE H1 1 393 - -
Vra1g0335 426 SUPERFAMILY "Winged helix" DNA-binding domain 34 111 IPR036390 -
Vra1g0335 426 Coils Coil 324 344 - -
Vra1g0335 426 SMART h15plus2 33 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0335 Vra-Chr1 4672064 4675266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0335 33 105 Single Myb Histone (SMH) Gene Family AT1G49950 37.500 5.98e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0335 - - gmx:547676 539.65