Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0334 ATGGGTGGTGGAGGAACGCTCGTGGAAGGGATTCGAAGATTGTTTCAACGACGCGCTTCGAGCTCTGCTGAAAACCAAAACAATGCCAACAATAGCCGCGTCTACGTGAGAGATTTGCGCGCGCAGTTGGCTTCCATTCCCAACCACGAACACCTTCTTGACCCTGATTTCGATTTCTCTACCTTGAAGCCCATCAAAGTTCCCGCACAAATCCCCTTCAGACCATCTTCTATGGATCATCACAAAAAGGGTGCTCAAGAGTCAGAGTTTTTTACTGAGTATGGAGAGGCGAGTCAATACCAGATCCAAGAGGTTGTTGGAAAAGGAAGTTATGGTGTTGTGGGTTCTGCCGTTGATACTCACACGGGTGAAAGGGTTGCAATCAAGAAAATTAGTGATGTTTTTGAGCATGTATCCGATGCCACACGGATCCTTAGAGAAATTAAGCTCTTGCGGTTGCTTAGACATCCTGATATTGTGGAAATTAAGCATATTATGCTTCCTCCTTCCCGGAGAGAGTTCAGGGATATCTATGTAGTGTTTGAGTTGATGGAATCTGATCTCCATCAAGTAATCAAGGCCAATGATGATCTTACCCCCGAGCACCATCAATTTTTCTTGTACCAACTTCTAAGGGGCCTGAAATATATTCATACAGCGAACGTGTTTCACCGTGATCTGAAGCCAAAAAATATTCTTGCTAACGCTGACTGCAAACTAAAAATATGCGATTTTGGGCTTGCTCGAGTTTCATTCAATGATGCTCCATCAGCTATATTCTGGACTGATTATGTTGCAACTCGGTGGTACCGTGCACCTGAATTATGTGGTTCTTTTTTTTCCAAGTACACTCCTGCAATTGATATATGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGGAAGCCATTGTTTCCTGGAAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGCACTCCTCCTCCAGAGTCCATTGCAAGGATTCGAAATGAAAAGGCCAAAAGGTATCTCAACAGCATGAGAAAAAAGCAACCAATTCCACTATCCCACAAATTTCCAAATGCAGATCCATTGGCTCTCCGGCTACTGGAACGGCTACTTGCATTTGATCCTAAAGACCGTCCATCAGCTGAAGAGGCACTAGCTGATCCTTACTTCATTGGTTTGGCGAACATAGACCGTGAACCATGCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGAAAATTGACCAAAGATGATGTCAGAGAGTTGATTTATCGAGAGATTTTGGAGTATCATCCCCAAATGCTGCAAGAACATCTTCGTGGTGGAGATCAAACTAGCTTCATGTATCCAAGTGGGGTTGATCGGTTCAAGAGACAGTTTGCACATCTTGAGGAGCATTATGGGAATGGTGAACGAAGCTCTCCATTGCAGAGACAGCATGCCTCCTTACCTAGAGAGAGAGTTTGTGCTCCCAAGGATATTGAAAAGAAACAAGACAACGATATTGAAAATCCAAGTGGATCAAATCTACAGAGTCCTCCAGGGTCTGATGTGACAGGTTCTCAAAATGGAACCTCCAGATCGAACTACAGTGCGCGTAGCTTGTTAAAAAGTGCGAGCATTAGTGCTTCTAAGTGTGTAGTTGTGAAACAAAATAAAGATCCAGAGCAAGAGGCAATTAAGGAGATAAATGATGAGACGATGGATGATGTGACAGATGTTGCTGCCCTCCACGCTTGA 1752 0.4361 MGGGGTLVEGIRRLFQRRASSSAENQNNANNSRVYVRDLRAQLASIPNHEHLLDPDFDFSTLKPIKVPAQIPFRPSSMDHHKKGAQESEFFTEYGEASQYQIQEVVGKGSYGVVGSAVDTHTGERVAIKKISDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDLLGTPPPESIARIRNEKAKRYLNSMRKKQPIPLSHKFPNADPLALRLLERLLAFDPKDRPSAEEALADPYFIGLANIDREPCTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEHLRGGDQTSFMYPSGVDRFKRQFAHLEEHYGNGERSSPLQRQHASLPRERVCAPKDIEKKQDNDIENPSGSNLQSPPGSDVTGSQNGTSRSNYSARSLLKSASISASKCVVVKQNKDPEQEAIKEINDETMDDVTDVAALHA* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0334 583 SMART serkin_6 100 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0334 583 SUPERFAMILY Protein kinase-like (PK-like) 96 395 IPR011009 -
Vra1g0334 583 MobiDBLite consensus disorder prediction 471 535 - -
Vra1g0334 583 MobiDBLite consensus disorder prediction 507 535 - -
Vra1g0334 583 MobiDBLite consensus disorder prediction 489 506 - -
Vra1g0334 583 ProSitePatterns Protein kinases ATP-binding region signature. 106 130 IPR017441 GO:0005524
Vra1g0334 583 ProSitePatterns MAP kinase signature. 135 238 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vra1g0334 583 CDD STKc_TDY_MAPK 99 436 - -
Vra1g0334 583 MobiDBLite consensus disorder prediction 553 583 - -
Vra1g0334 583 Pfam Protein kinase domain 100 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0334 583 Gene3D Phosphorylase Kinase; domain 1 116 437 - -
Vra1g0334 583 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 66 523 - -
Vra1g0334 583 Gene3D Transferase(Phosphotransferase) domain 1 186 414 - -
Vra1g0334 583 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 66 523 - -
Vra1g0334 583 MobiDBLite consensus disorder prediction 555 577 - -
Vra1g0334 583 ProSiteProfiles Protein kinase domain profile. 100 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0334 Vra-Chr1 4662954 4667669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0334 85 583 MAP Kinase Gene Family AT3G18040 82.411 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vra1g0334 Pkinase 3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0334 - - gmx:100780831 1018.07