Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0328 ATGGCCGGAATTTCTAAAAGAAACATCTATGATCAATGTTCATCTGATCAATGTCCATCCAATCTTAATATCCTTGTCATTGATACTGACATCAAAGTTCTTGAATTAATCGAGAAAACACACAAGGATTCTCATCAAGTTATAATATGTACTGAAACTTCAAGAGCTGTCGATCTTTTACTGAGAAAAGAAATAGACATTCATTTGATTATCATGGAGCTTCATATGCCAATGATGGATGGCTATGAATTCTTGCAATTTCTCAATAAAGAAGAAATCTATGTTGCTTTCATCCTCATGTTTTTTGGCGATACCGTGCCTAGCCCACAGAAGGCTTTTGAACTTGGAGCTTGGTATTATTGGCTTAAACCCTTGGACGACTTTTACGTCAAGACCTTTTGGCCGTTTTTGGTGCGGCATTACCAAAAGGAGCTCAAAAAGAAAAATATTAATGGCTTGAAATTTGATAAAAGAAGTGACACAAGTGGTAGTAGTTCTGAATGTTTTTCTGATATGGAAGTCATAAGGAAAAATATGAATGGCTTGAAACTTGATGAAATAAGTGACACAAGTGGTAGTTCTGAATGTTTTTCTGATACGGAAGTCGTTGCCGGAATTTCTGAAGAAAACATCTGTGATCAATGTCCATCCAATCTTAATATCCTTGTCATTGATACTGACATCNAAGTTCTTGAATTAATCGAGAAAACACACAAGGATTCTCATCAAGTTATAATATGTACTGAAACTTCAAGAGCTGTCGAAATTTTACTGAGAAAAGAAATAGACTTTCATTTGATTATCATGGAGCTTCATATGCCAATGATGGATGGCTATGAATTCTTGCAATTTCTCAATAAAGAAGAAATCTATGTTGCTGTCATCCTCATGTTTTTTGGCGATACCGTGCCTAGCCCACAGAAGGCTTTTGAACTTGGAGCTTGNTATTATTGGCTTAAACCCTTGGACGACTTTTACGTCATTAACTTTTGGCCGTTTGTGGTGCGGCATTACGGGCTCATAACGAAAAATATTAATGGCTTGAAATTTGGTAAAAGAAGTGACACAAGTGGTAGTTCTGAATGTTTTTCTGATATGGAACTTGAAGAAATAAGTGACACAGGTGGTAGTTCTGAATGTTTTTCTGATATGGAAGACTTTGCCGATGATACCTTCCACATGAAAGATGATGATACCCTTCACAAGAAAGAATAG 1215 0.3605 MAGISKRNIYDQCSSDQCPSNLNILVIDTDIKVLELIEKTHKDSHQVIICTETSRAVDLLLRKEIDIHLIIMELHMPMMDGYEFLQFLNKEEIYVAFILMFFGDTVPSPQKAFELGAWYYWLKPLDDFYVKTFWPFLVRHYQKELKKKNINGLKFDKRSDTSGSSSECFSDMEVIRKNMNGLKLDEISDTSGSSECFSDTEVVAGISEENICDQCPSNLNILVIDTDIXVLELIEKTHKDSHQVIICTETSRAVEILLRKEIDFHLIIMELHMPMMDGYEFLQFLNKEEIYVAVILMFFGDTVPSPQKAFELGAXYYWLKPLDDFYVINFWPFVVRHYGLITKNINGLKFGKRSDTSGSSECFSDMELEEISDTGGSSECFSDMEDFADDTFHMKDDDTLHKKE* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0328 404 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Vra1g0328 404 ProSiteProfiles Response regulatory domain profile. 220 335 IPR001789 GO:0000160
Vra1g0328 404 SMART REC_2 22 133 IPR001789 GO:0000160
Vra1g0328 404 SMART REC_2 219 328 IPR001789 GO:0000160
Vra1g0328 404 Gene3D - 205 330 - -
Vra1g0328 404 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 160 IPR045279 GO:0009736
Vra1g0328 404 PANTHER TWO-COMPONENT RESPONSE REGULATOR 215 338 IPR045279 GO:0009736
Vra1g0328 404 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 215 338 - -
Vra1g0328 404 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 18 160 - -
Vra1g0328 404 SUPERFAMILY CheY-like 217 340 IPR011006 -
Vra1g0328 404 SUPERFAMILY CheY-like 20 142 IPR011006 -
Vra1g0328 404 Pfam Response regulator receiver domain 24 126 IPR001789 GO:0000160
Vra1g0328 404 Pfam Response regulator receiver domain 221 323 IPR001789 GO:0000160
Vra1g0328 404 Gene3D - 21 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0328 Vra-Chr1 4620701 4623107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0328 199 336 Response Regulator Gene Family AT4G16110 30.935 4.85e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra1g0328 Response_reg 2.9e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0328 - - vra:106768288 822.002