Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0321 ATGGATATTGAGGAGGATATCCGTTCTTTACAGCTTGAATCAGCAGAAGACAATAACGGGGTGGTAAATCCTGAGGATGGAAGGCCGGAAGAGGTTGAGAAATCTGATAAGATGGATGAAGATCCTAAGCAAGAGGTTGAAGCACAGGCTGTTGAACCTGAGCCAAAAGTGAAAGATAAGGAGGTTCATCCTGTTCAAGAAGAAGAAGAGGAGCCAGAGACAACTAAAAGGCACTTGAATGTGGTGTTTATTGGCCATGTGGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAAGTTGATGAACGGACTATTCAAAAATACGAGAAAGAGGCCAAGGACAAAAGTCGAGAAAGTTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAAACTGAGACAACAAGGTTTACTATTTTGGATGCACCTGGCCACAAAAGCTATGTTCCTAATATGATTAGTGGTGCATCTCAAGCTGATATTGGAGTTTTGGTTATATCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAGCATGTCCAGCTTGCAAAAACGCTGGGTGTGTCTAAGCTGCTTGTTGTTGTTAATAAAATGGACGAACCTACAGTGCAGTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCTGGGTACAATGTCAAGAAAGATGTCTTGTTTTTGCCAATATCTGGTCTAGCGGGTACAAACATGAAAACAAGGGTGGATAAAAGTGTTTGCCCATGGTGGAATGGGCCTTGCTTGTTTGAGGCCCTTGATGCTATCGAAGTTCCACCACGAGATCCCAAAGGTCCTTTCAGGATGCCCATTATTGACAAATTTAAGGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTTCTGTTCGCGAGGGAGATTCTTTGTTGGTCATGCCAAATAAGGATCAAGTAAAAGTTGTTGCCATATTCATTGATGAGGACCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGAAGAAGACATAGTAACTGGATTTGTCCTGTCTAGTGTTGCTAATCCAATACCAGCAGTTACTGAGTTTGTTGCTCAGTTGGTGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCATATCCACTCTGTGGTTGAGGAATGTGAGATTGTTGAACTTCTACAGCAAATTGATACAAAGACAAGGAAGCCTTTGAAAAAGAAAGTTCTCTTTGTAAAGAATGGCGCTGTTGTAGTGTGCCGTGTTCAGGTTAATAACTCTATTTGCATTGAGAAGTTCTCTGATTTCCCGCAACTTGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCCGTGGGAAAAGTGACTGGTCTGTGA 1509 0.4228 MDIEEDIRSLQLESAEDNNGVVNPEDGRPEEVEKSDKMDEDPKQEVEAQAVEPEPKVKDKEVHPVQEEEEEPETTKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDEPTVQWSKERYDEIESKMVPFLKQSGYNVKKDVLFLPISGLAGTNMKTRVDKSVCPWWNGPCLFEALDAIEVPPRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGENLRIRLSGVEEEDIVTGFVLSSVANPIPAVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDTKTRKPLKKKVLFVKNGAVVVCRVQVNNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0321 502 Gene3D Translation factors 305 390 - -
Vra1g0321 502 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 396 501 IPR009001 -
Vra1g0321 502 CDD eRF3_C_III 394 502 - -
Vra1g0321 502 SUPERFAMILY Translation proteins 299 392 IPR009000 -
Vra1g0321 502 MobiDBLite consensus disorder prediction 23 75 - -
Vra1g0321 502 MobiDBLite consensus disorder prediction 1 75 - -
Vra1g0321 502 PANTHER BNAA06G12300D PROTEIN 2 496 - -
Vra1g0321 502 CDD eRF3_II 307 388 - -
Vra1g0321 502 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Vra1g0321 502 Pfam Elongation factor Tu domain 2 320 386 IPR004161 GO:0005525
Vra1g0321 502 PRINTS GTP-binding elongation factor signature 80 93 IPR000795 GO:0003924|GO:0005525
Vra1g0321 502 PRINTS GTP-binding elongation factor signature 159 169 IPR000795 GO:0003924|GO:0005525
Vra1g0321 502 PRINTS GTP-binding elongation factor signature 175 186 IPR000795 GO:0003924|GO:0005525
Vra1g0321 502 PRINTS GTP-binding elongation factor signature 219 228 IPR000795 GO:0003924|GO:0005525
Vra1g0321 502 PANTHER TRANSLATION FACTOR 2 496 - -
Vra1g0321 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 311 IPR027417 -
Vra1g0321 502 CDD EF1_alpha 80 301 - -
Vra1g0321 502 Gene3D Translation factors 392 502 - -
Vra1g0321 502 Gene3D - 57 300 IPR027417 -
Vra1g0321 502 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 76 302 IPR000795 GO:0003924|GO:0005525
Vra1g0321 502 Pfam Elongation factor Tu C-terminal domain 393 501 IPR004160 -
Vra1g0321 502 Pfam Elongation factor Tu GTP binding domain 76 282 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0321 Vra-Chr1 4575812 4584082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0321 76 497 Eukaryotic Initiation Factors Gene Family AT5G60390 38.118 1.69e-97 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0321 K03267 - gmx:100784412 941.414