Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0318 ATGGCAGCCCCGGATCCGTCCAAAAAAGTGGCTGATAGATATCTGAAGCGTGAAGTTCTTGGTGAAGGTACCTATGGAGTTGTGTACAAAGCCATTGACACCCACACAGGACAGACAGTTGCAATTAAAAAAATTCGGCTTGGCAAGCAGAAAGAAGGAGTAAATTTTACAGCTCTTAGAGAAATAAAGCTTCTTAAAGAGCTTAAGGATCCTAATATTGTTGAATTGATAGATGCATTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACGGACCTTGAAGCTGTCATACGAGACCGAAATATTTTTCTTTCACCGGCTGATACAAAATCTTACCTTCAAATGACGCTAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATGTTTGGAAGCCCACACAGAAGGTTCACTCATCAGGTTTTTGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAGTATGGCTCTGGGGTTGACGTTTGGGCTTCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTTTTGCAGGGTACAAGTGACATTGATCAATTAGGAAAGATTTTTTCGGCATTTGGCACTCCAACAGCTTCTCAGTGGCCTGATATGGTATACCTTCCTGATTACGTCGAATACCAATATGTTCCTGCACCCCCTCTGCGTTCTTTGTTTCCGATGGCAACTGATGATGCATTAGATTTGTTATCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTGCCTTCAGATCCAGACAAGCTCCCTAGACCTGCTCCTAAGAGGGAATCTAAGGCTTCTGATTTCAATTTACAGGAGGGTCCTACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGAACGTGATGGGTTTGAAGGAAATTCCCAACAAGCAGATAAGGTTGATGGCGGTTTTGGTGATTTCAGACAGACAACTGATGATAATTCAGGCAAGAATGAATCAGCTCCAATGTCTGTAGATTTTTCTATCTTTGGATTAAAACCTCCAAATAGACCTACAATTAACAGTGCTGATAGAACACATTTAAAAAGAAAATTAGATCTAGAATTTCAACAGCCAGAATGA 1248 0.4119 MAAPDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIVELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARMFGSPHRRFTHQVFARWYRAPELLFGAKQYGSGVDVWASACIFAELLLRRPFLQGTSDIDQLGKIFSAFGTPTASQWPDMVYLPDYVEYQYVPAPPLRSLFPMATDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPSDPDKLPRPAPKRESKASDFNLQEGPTVLSPPRKSRRVMPERDGFEGNSQQADKVDGGFGDFRQTTDDNSGKNESAPMSVDFSIFGLKPPNRPTINSADRTHLKRKLDLEFQQPE* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0318 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vra1g0318 415 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Vra1g0318 415 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Vra1g0318 415 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Vra1g0318 415 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Vra1g0318 415 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0318 415 MobiDBLite consensus disorder prediction 363 377 - -
Vra1g0318 415 MobiDBLite consensus disorder prediction 295 415 - -
Vra1g0318 415 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0318 415 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Vra1g0318 415 MobiDBLite consensus disorder prediction 335 349 - -
Vra1g0318 415 MobiDBLite consensus disorder prediction 398 415 - -
Vra1g0318 415 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Vra1g0318 415 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0318 415 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0318 Vra-Chr1 4562222 4566434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0318 4 412 Core Cell Cycle Gene Families AT1G18040 74.817 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Vra1g0318 Pkinase 1.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0318 K02202 - gmx:100776618 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0318 1 4562222 4566434 Vra1g0658 1 7752324 7756875 PCT