Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0306 ATGCCTGTTGTTACAAACAGAACAACACCTACAGTAGCAGAGCACATCAAATGGAGAAGACCCAGAAACCAATTCAACCATCATCACCATCACCCCATTCCAGAATCAGATCCAAACCCTCAAATCCCTTCCATAATCCAATCAACTAGGGGCAAGTCCACCATATCCTCCCTGCTCCTCTCCACTTTCTCCAACAATACTCCCTCCTCCAATAATGACACCCCCATCATCAATGCCACTGCCCAAAGCAAGAAAAAAAACAACTTTTCCGCTGCAACCTTCAGAGGGTTGGGGTGCACCGCCGGCGCGTCACAGCAGGTGTCGGTGCCGGCGGTGATTCGCTCCTCCGCCGATTGGCAAGGGAAGAAAACAAGAAAGAAGAAGCACAAGAGAACCACCAGCGGCGGCAAGAACAAGACTTTCCATGGCGGGATTCTGGAAGGTTCCAATCCTGGGTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGCATTGGGTTCTCAGCAGATACTGCTGCCTCCGTTGATTGTGTTGTGGCCCGGAAGAATGTATCTGCCAGAGGGAAAATTGATGTGGATAAGATTACTCACAGGGAGCGATCATCGTATGTGGGAAGGCGCACAGAAACCTTCACTTTTCTGGACACTGATTCTGACATTTTCACGCCACGCTCTGCCTCTGACTCTTATGGAACTGCAACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGTTTTGCTGAGATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACACGATCAATTTAGAGACTGGAGACTTGATGTTGATAATATGTCATATGAGCAATTGCTTGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTTAAGGAAGATGAGATGGGACGGAACATAAGGAAGGCCAGACTTCAATTTTGGAATGATACATCAAAGCATCAAATAGATAAAGAGTGCAGCATTTGTCAGGAGGAGTATGAAGCAGGTGATGAGCTGGGGAGGCTAAATTGTGAACACAGTTATCACTTTCAGTGTATAAAACAATGGGTTTCACAGAAAAACTTCTGCCCAGTATGTAAGCAGCAAGTTGCAGCACGACATTGA 1128 0.4645 MPVVTNRTTPTVAEHIKWRRPRNQFNHHHHHPIPESDPNPQIPSIIQSTRGKSTISSLLLSTFSNNTPSSNNDTPIINATAQSKKKNNFSAATFRGLGCTAGASQQVSVPAVIRSSADWQGKKTRKKKHKRTTSGGKNKTFHGGILEGSNPGCVDFQDVWCGPGIGFSADTAASVDCVVARKNVSARGKIDVDKITHRERSSYVGRRTETFTFLDTDSDIFTPRSASDSYGTATYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKARLQFWNDTSKHQIDKECSICQEEYEAGDELGRLNCEHSYHFQCIKQWVSQKNFCPVCKQQVAARH* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0306 375 MobiDBLite consensus disorder prediction 21 44 - -
Vra1g0306 375 MobiDBLite consensus disorder prediction 117 142 - -
Vra1g0306 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 374 IPR013083 -
Vra1g0306 375 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 7 375 - -
Vra1g0306 375 Pfam Ring finger domain 325 368 IPR001841 -
Vra1g0306 375 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Vra1g0306 375 SUPERFAMILY RING/U-box 326 372 - -
Vra1g0306 375 MobiDBLite consensus disorder prediction 121 136 - -
Vra1g0306 375 SMART ring_2 327 367 IPR001841 -
Vra1g0306 375 CDD RING-H2_PA-TM-RING 326 368 - -
Vra1g0306 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 375 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0306 Vra-Chr1 4480053 4483644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0306 12 282 C3H Transcription Factor Family AT1G73760 40.753 4.36e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0306 - - gmx:100819907 654.055