Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0305 ATGGGGAAGAAGAAGAAGAGGGTTTCCTCCAAGGTGTGGTGTTACTACTGCGATCGCGAATTCGACGACGAGAAGATCCTGGTGCAGCATCAGAAAGCGAAGCACTTTAAGTGTCACGTCTGCCACAAGAAGCTCTCAACCGCCAGCGGCATGGCCATCCACGTTCTCCAGGTCCACAAGGAATCCGTCACCAAGGTGCCCAATGCAAAACCTGGCAGAGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATTCTGGCTGCACATTATGGTGAAGAAGAGGATGATGTTCCATCAAAGGCAGCCAAGGTTGATATTCCACCAACTCAGCTTGTAGGTGGAATGAGGCCACCTCCTCTGGGTACAGGATATCCTCCACGATCAGCCATGCCTGCAATTCCACCAGTTTATAATCCAGCTGTACCCCTGCCACCAAATGCTTGGGTGGTTCCGCCTCGACCACAGCCATGGTTTTCACAACCTCCAGCTGTTTCAGTTCCTCCTCCTGCCCCATACACACAGCAGCCATTATTTCCTGTGCAGAATGTCAGGCCTCCACTGCCAGCAACTGCTCCAGCAGCACTGCAAACTCAGATTGCTCCTCCTGGATTGCTTACATCTGCACCGGTCCCAGTTTCACAACCTTTGTTCCCTGTTGTTGGAAACAACCATACAACGACTCAAGGTTCAACATATTCTGCTCCACCTCTGCCCTCAAGTGTTCCATCAGTTACTCCAGTGATGTCTACAAATGTCCCTGTTGATACACATTTGAGTACCCACTCTTCTGTAACAAGTAGTTACCAGCCTATAGGAGTTCCAGGTGCAGCAGCAAGTAATTCACACTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTTCTCAACCTGCCACCAACGAAGTCTACTTAGTTTGGGATGACGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCAATTGACGCAGCTATAGACAAGAGGATACTAGAAAGCAGGCTGGCTGGTCGAATGGCATTTTAG 1119 0.4888 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTASGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDVPSKAAKVDIPPTQLVGGMRPPPLGTGYPPRSAMPAIPPVYNPAVPLPPNAWVVPPRPQPWFSQPPAVSVPPPAPYTQQPLFPVQNVRPPLPATAPAALQTQIAPPGLLTSAPVPVSQPLFPVVGNNHTTTQGSTYSAPPLPSSVPSVTPVMSTNVPVDTHLSTHSSVTSSYQPIGVPGAAASNSHSYASGPNTGGPSIGPPPVIANKAPASQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0305 372 Gene3D Classic Zinc Finger 1 66 - -
Vra1g0305 372 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Vra1g0305 372 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Vra1g0305 372 SMART c2h2final6 36 59 IPR013087 -
Vra1g0305 372 SMART c2h2final6 12 35 IPR013087 -
Vra1g0305 372 PANTHER ZINC FINGER PROTEIN 207 1 372 - -
Vra1g0305 372 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 372 - -
Vra1g0305 372 MobiDBLite consensus disorder prediction 284 312 - -
Vra1g0305 372 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Vra1g0305 372 SUPERFAMILY beta-beta-alpha zinc fingers 12 61 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0305 1 372 C2H2 Transcription Factor Family AT1G30970 60.465 2.63e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra1g0305 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0305 - - gmx:100789368 651.744