Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0303 ATGAAGAGTGAGCAAGCAGGGAGCAATGGAAAGAACACTTTCATTCAGGCACATAGGGCATGGCTTCCCAAGCTTTTGATGCTGTGGATCCTTCTCATGGCTCTAATTGGTTGGTGCATCTATACTAAAATGGATGCTGACACTAAAGTCAGAAGAAAAGAGGTGCTCGGCAGCCTCTGTGATCAAAGGGCAAGAATGCTGCAAGATCAATTCAGTGTCAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAACACCTTCTGCAATTGACCAGGAAACCTTTGCAGAGTATACAGCCAGGACAGCATTTGAAAGACCATTGCTCAGTGGAGTGGCCTATGCACAAAGAGTGGTTAACTCCGAGAGAGAATCATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAAAGCCTTCTCAGGTTAGAGATGAGTATGCACCGGTGATATTTGCACAAGAAACTCTTTCTTACCTCGAATCTCTTGATATGATGTCCGGGGAGGAGGACCGAGAGAATATTTTGAGGGCTAGGGCCACTGGGAAAGCGGTTCTCACTAGCCCTTTTAAGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTGACATTTCCTGTTTATAAATCTAAGCTCCCTACAAAGCCAACAATGGAAGAGCGCATTAAAGCAACAGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTCGTGGAGAATTTACTTGGTCAACTTGCTGGGAACCAAGCAATTTTGGTGAACGTATATGACATCACAAACTTTACTGATCCCTTAATCATGTATGGGAAGCAAGATGAAGAAGGTGACATGTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATAAAATGATATGTAGGTATCACCAGAAGGCACCGACAAACTGGATAGCACTTACCACGGCATTCTTATTTTTTGTGATTCTTTTATTAGTGGGTTATATTTTGTATAGTGCTGGAAATCGTATTGTCAAAGTAGAGGATGATTTTCATAAAATGGCAGAACTAAAAGTCCGTGCAGAATCAGCTGATATTGCCAAGTCACAGTTTCTAGCCACTGTTTCTCATGAAATCAGAACACCCATGAATGGCATTTTAGGAATGCTCGGTCTGCTTCTAGGCACAGAATTGAGTTCCACTCAACTAGATTATGCTCAGACTGCTCAAGCATGTGGGATGGCTCTGATAGCATTGATAAATGAGGTGCTTGACCGTGCCAAAATTGAAGCTGGCAAGTTAGAGCTGGAAACAGTTCCATTTGACATTCGATCCATACTTGATGATGTGCTTTCTCTTTTCTCTGAGAAGTCTCGGCACAAAGGTTTAGAGCTGGCAGTATTTGTTTCTGATAAAGTTCCAGATATTGTCATGGGAGATCCTGGAAGATTCAGACAAATAGTAACAAACCTTGTTGGCAATTCAGTTAAATTCACTGAGCGAGGACATATATTGGTAAAAGTCCATCTAGCTGAAAATAGGATGTCCACAATGAATGGGAAAATGGAGACTTTTCTCAATGGAAGATCAGATGAAGTTGTGCATGTGTCTAGCGGTGGTTATAATTTCAAAACTCTAAGCGGACATGAAGCAGCTGATGAACGGAACAGCTGGGACAATTTTAAGCATCTGATTGCCGATGAAGAATTTTTCTTTGATGATTCAGTTAAAAAGGTGGCCAGTGAATCCTATGAGCAAGTCACCTTGATGGTGAGTGTGGAGGACACTGGGAATGGAATTCCTTTCATAGCTCAAGATAAGATTTTCATGCCATTTGTACAGGCAGACAGCTCAACCTCAAGACATTATGGTGGTACTGGGATTGGCTTGAGTATAAGCAAGTGCCTGGTTGAACTGATGGGTGGTGAGATCAGTTTTATAAGCCGACCCCAGGTTGGGAGCACGTTTTCATTTACTGCAGATTTTGGAACAATTAAGAAAAATTCAATAACTGACATGAAGAAACATAACTTGGAAGATCTACGTTCCAGTTTTAGAGGGTTTAAAGCCATTGTGGTTGATGGAAAACCTGTTAGAGCAGCCGTTACTAGATACCATCTCAAGAGACTAGGGATTCAGGCCAAAGTTGCAAATAGCATCAACAAGGCTGTTTCTTTATGTGGGAAAAATTGGTCTTTGACCTCAGGAATATTTCAGCCTGATATGATTTTTGTTGAGAAAGACTCGTGGATTTGTGGAGAGGATGGGATCTTCAACGTGTGGCAACTGGACTGGAAACAGAACGGGCACATGTTTAAGATACCTCAAATGATCCTTCTTGCAACCAACATTACTAACACTGAATTTGATAAAGCTAAAGCAGCAGGTTTCAGTGATACAGTGATCATGAAGCCTCTGAGAGCCAGCATGGTGGCTGCATGTCTTCAACAAGTTCTGGGAACGGGGAAGAAGAGACAGCTAGGAAAGGACACGGGTTCATCTTTTGCACGAAGCCTTCTTTGTGGGAAAAAAATACTTGTGGTTGATGACAATAGGGTAAATAGAAGGGTCGCAGCAGGTGCATTACAAAATTTTGGAGCTCATGTAACATGTGCAGAAAGTGGCAAAATTGCTCTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTCAAGCAACTGGGAAAATTCGGGAAATGGAGAGAAAGGCAAATGAGCTTCTGATGAATGGTGAATGTGGTGAAGGAAATGGCTGGAAAAAGGAGTACCATTTACCTATATTGGCCATGACAGCAGATGTAATTCAAGCAACGTACGAGAAGTGTGTGGAATGTGGAATGGATGGTTACGTAACAAAGCCTTTTGAGGAAGAAAATCTGTATCAAGCAGTTGCAAAGTTTTTCAACCCCAAGCCTACATCAGACAACTCATTACAGAATGGCAACAGAACTGGGAAAGCACCTTAA 3000 0.42 MKSEQAGSNGKNTFIQAHRAWLPKLLMLWILLMALIGWCIYTKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERESFEKQHGWVIKTMERKPSQVRDEYAPVIFAQETLSYLESLDMMSGEEDRENILRARATGKAVLTSPFKLLGSHHLGVVLTFPVYKSKLPTKPTMEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNFTDPLIMYGKQDEEGDMSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYSAGNRIVKVEDDFHKMAELKVRAESADIAKSQFLATVSHEIRTPMNGILGMLGLLLGTELSSTQLDYAQTAQACGMALIALINEVLDRAKIEAGKLELETVPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHILVKVHLAENRMSTMNGKMETFLNGRSDEVVHVSSGGYNFKTLSGHEAADERNSWDNFKHLIADEEFFFDDSVKKVASESYEQVTLMVSVEDTGNGIPFIAQDKIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISRPQVGSTFSFTADFGTIKKNSITDMKKHNLEDLRSSFRGFKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNWSLTSGIFQPDMIFVEKDSWICGEDGIFNVWQLDWKQNGHMFKIPQMILLATNITNTEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQLGKDTGSSFARSLLCGKKILVVDDNRVNRRVAAGALQNFGAHVTCAESGKIALEMLQLPHNFDACFMDIQMPEMDGFQATGKIREMERKANELLMNGECGEGNGWKKEYHLPILAMTADVIQATYEKCVECGMDGYVTKPFEEENLYQAVAKFFNPKPTSDNSLQNGNRTGKAP* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0303 999 SUPERFAMILY CheY-like 684 819 IPR011006 -
Vra1g0303 999 SMART REC_2 842 975 IPR001789 GO:0000160
Vra1g0303 999 CDD HATPase_EvgS-ArcB-TorS-like 483 661 - -
Vra1g0303 999 PRINTS Bacterial sensor protein C-terminal signature 588 602 IPR004358 GO:0016310|GO:0016772
Vra1g0303 999 PRINTS Bacterial sensor protein C-terminal signature 606 616 IPR004358 GO:0016310|GO:0016772
Vra1g0303 999 PRINTS Bacterial sensor protein C-terminal signature 623 641 IPR004358 GO:0016310|GO:0016772
Vra1g0303 999 PRINTS Bacterial sensor protein C-terminal signature 647 660 IPR004358 GO:0016310|GO:0016772
Vra1g0303 999 Pfam CHASE domain 96 276 IPR006189 -
Vra1g0303 999 Pfam His Kinase A (phospho-acceptor) domain 366 431 IPR003661 GO:0000155|GO:0007165
Vra1g0303 999 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 432 IPR036097 GO:0000155|GO:0007165
Vra1g0303 999 SMART CHASE_2 93 278 IPR006189 -
Vra1g0303 999 Gene3D - 837 985 - -
Vra1g0303 999 Gene3D - 681 822 - -
Vra1g0303 999 PANTHER HISTIDINE KINASE 4 11 982 - -
Vra1g0303 999 Pfam Response regulator receiver domain 844 914 IPR001789 GO:0000160
Vra1g0303 999 SMART HisKA_10 366 431 IPR003661 GO:0000155|GO:0007165
Vra1g0303 999 Gene3D CHASE domain 97 312 IPR042240 -
Vra1g0303 999 Gene3D - 430 666 IPR036890 -
Vra1g0303 999 ProSiteProfiles Response regulatory domain profile. 843 979 IPR001789 GO:0000160
Vra1g0303 999 ProSiteProfiles Histidine kinase domain profile. 373 663 IPR005467 -
Vra1g0303 999 Gene3D - 338 429 - -
Vra1g0303 999 ProSiteProfiles Response regulatory domain profile. 688 818 IPR001789 GO:0000160
Vra1g0303 999 SUPERFAMILY CheY-like 841 980 IPR011006 -
Vra1g0303 999 ProSiteProfiles CHASE domain profile. 93 305 IPR006189 -
Vra1g0303 999 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 420 658 IPR036890 -
Vra1g0303 999 PANTHER TWO-COMPONENT HISTIDINE KINASE 11 982 - -
Vra1g0303 999 Gene3D - 44 96 - -
Vra1g0303 999 CDD HisKA 366 427 IPR003661 GO:0000155|GO:0007165
Vra1g0303 999 SMART HKATPase_4 478 663 IPR003594 -
Vra1g0303 999 CDD REC_hyHK_CKI1_RcsC-like 844 975 - -
Vra1g0303 999 Coils Coil 416 436 - -
Vra1g0303 999 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 478 661 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0303 Vra-Chr1 4438961 4447494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0303 7 988 Histidine Kinase Gene Family AT2G01830 69.657 0.0 1363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra1g0303 HATPase_c 1.5e-29 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0303 K14489 - gmx:100818481 1730.69