Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0301 ATGGGAATTTTAAAGAGCACCATCAATGCCCCTCTTAGCTTTGAATGGATTGGTCAAGATATATGCAAATGGAAACATGTTGTGTGTGATTCATCAAAACGTGTGAAAGCTATTCAGATTGGGAATCAAAACCTCCAAGGGACTCTCCCCAAAGAGCTTGCCATGTTAACGGCATTGACCCGTTTTGAGTGTCAAGACAATAATCTTACAGGGGTATTCCCTTACCTCTCAAAATCCTTGCAGAGGTTGGTAATCCATGACAACAACTTCAACTTATTTCCCAGTGATTTCTTCAAGGGCATGAGCAGTTTGCAAGAGGTGACAATTGACAACAACCCCTTCTCTCAATGGAACATTCCTGACAGTCTCAAGGACTGTGTCGCACTCCAAACTTTTAGTGCTCAGAGTGCTGGCCTTGCTGGGACAATCCCAGATTTTTTTGGCAGAGATGGTCCCTTTGCAGGTTTGGTTTTCTTAGATTTGTCTGATAATTTTCTAGAAGGTGGATTGCCTGCAAGCCTTTCAGGTAGTTCAATAGAGAATCTTTTGGTGAATGGACAAAACGGCAACTCTAAACTCAATGGCACCCTCGAGGTGTTAGGCAAAATGAAATCTTTGAAGCAAATATGGGCTAATGGGAATTCCTTCACTGGTCCTATACCAGATTTGTCACACCATGATCAACTTTATGATGTTAACTTGAGGGATAATCAATTGACTGGTGTTGTTCCACCCTCTTTAGTTGCTTTACCAAGTTTGAAGTCTGTGAACTTAACAAATAACCTTCTTCAAGGATCCCCTCCTAGGTTCAAAGATGGTGTAGCAGTGGACAACAACATGGATAAGGGGAGAAATCAGTATTGCACAGACGTGGTGGGGCAATCGTGTAGTCCCCTTGTAAATGCTTTACTATCTATTGTACAACCTTTGGGGTATCCTTTAAATTTTGCTCAAAGTTGGCAGGGTAATGATCCGTGTGCAAATGGATGGACAGGTGTAATCTGTTCTGGGGGAAATGTTTCGGTCATCAACTTTCAAAACATGGGTTTGTCTGGCACTATCTGTCCATGTTTTGCTGCTCTTACTTCGGTGACAAAAGTACTTCTTGCTAACAATAATCTCACAGGTACTATACCAAATGAACTTGCTAGTTTGCCTCATTTACAAGAGTTAGATGTTTCCAACAATCATATATACGGCAAAGTGCCATCATTTCGTGAAGGTGTGGATGTTAAATATGAAGGGAATCCTGACATTGGAAAGAATGAACAAACTAATCCAGGTCATGTAGGTAAGGTAAACAACAATAATACTGCAATAATTGTTGGAGTTACGGTAATGGTTGTTGTTTTACTTGTTGCTGGGGTTTTGATACTTGTTATGTTTAGAAGAAAGGCAAAGCGTAAGCTTCAAAACCAAAGCACAATTGTGGTACCTCCTCGTTATGGGGATGGAAGTGTTGCAAAGATAATCAGTGGAAATATTAGTTCATTATTAAGTCCTTCACAGAGTGTTTATAAAGGAGAAGCAAGTAACATGTTAATTCCAATTCAAATTTTGAGAGAAGCAACTAACAACTTTAGCGAGGGAAACATTTTGGGAAAAGGGGGATTTGGCACAGTATACAAAGGGGAATTGCATGATGGGACAAAGATTGCAGTGAAAAGGATGCAATCAACAGGATTTGTAGATCAAAAAGGGCAGAGTGAGTTCACGTCTGAAATTGCTGTGCTCACCAGGGTTCGACACAGAAATTTGGTTGCACTCTTGGGGTTTTGCTTAGATGGTAGTGAAAGACTTCTTGTGTATGAATGCATGCCTCAAGGTGCTCTTAGTAGACATTTGGTAAACTGGAAACAAGAGGGGCTAAAACCACTTGAATGGAAGACAAGACTTGGTATTGCATTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCACAACAGATTTTTATTCACAGAGATCTTAAACCATCCAACATTTTGCTTGGAGATGATATGCGAGCCAAAGTATCAGACTTTGGACTCGTTCGACTTGCTCCTGAAGGGAAAACCTCGTTTCAAACTAGACTGGCTGGAACTTTTGGGTACATGGCACCAGAATATGCAGCTACTGGGCGACTTACAACAAAGGTTGATGTGTATAGTTTTGGAGTTATTCTTATGGAGATGATAACAGGAAGAAAGGCACTTGATGACAGTCTACCAGAAGAAAACATCCACCTCGTTACATGGTTTCGCAAGATGTTAATAAATAAGGATTCATTCCGAACAATCATTGACCCAACAATTAAGGTTGATGAGGAAATGTTACTGAGTATTAGCACTGTTGCAGGGTTAGCAGGACATTGTTGTGCAAGGGAGCCTCACCAACGCCCTGACATGAGTCATGTGGTGAATGTGTTGTCTTCTCTTGTTCAAGTGTGGAAGCCTTCGGAAACAAATGTTGATGAAGCATATGAAATTGACTTTGATATGACATTACCAGAAGCACTCCAAAGGTGGAAACAATTTGAGGGGAATAGCCACACCATTGACATTGATGTAACTTCTTCAACAAGACATCTTAACGCAAACAACTCATACTCAGATCCATAA 2604 0.4067 MGILKSTINAPLSFEWIGQDICKWKHVVCDSSKRVKAIQIGNQNLQGTLPKELAMLTALTRFECQDNNLTGVFPYLSKSLQRLVIHDNNFNLFPSDFFKGMSSLQEVTIDNNPFSQWNIPDSLKDCVALQTFSAQSAGLAGTIPDFFGRDGPFAGLVFLDLSDNFLEGGLPASLSGSSIENLLVNGQNGNSKLNGTLEVLGKMKSLKQIWANGNSFTGPIPDLSHHDQLYDVNLRDNQLTGVVPPSLVALPSLKSVNLTNNLLQGSPPRFKDGVAVDNNMDKGRNQYCTDVVGQSCSPLVNALLSIVQPLGYPLNFAQSWQGNDPCANGWTGVICSGGNVSVINFQNMGLSGTICPCFAALTSVTKVLLANNNLTGTIPNELASLPHLQELDVSNNHIYGKVPSFREGVDVKYEGNPDIGKNEQTNPGHVGKVNNNNTAIIVGVTVMVVVLLVAGVLILVMFRRKAKRKLQNQSTIVVPPRYGDGSVAKIISGNISSLLSPSQSVYKGEASNMLIPIQILREATNNFSEGNILGKGGFGTVYKGELHDGTKIAVKRMQSTGFVDQKGQSEFTSEIAVLTRVRHRNLVALLGFCLDGSERLLVYECMPQGALSRHLVNWKQEGLKPLEWKTRLGIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKTSFQTRLAGTFGYMAPEYAATGRLTTKVDVYSFGVILMEMITGRKALDDSLPEENIHLVTWFRKMLINKDSFRTIIDPTIKVDEEMLLSISTVAGLAGHCCAREPHQRPDMSHVVNVLSSLVQVWKPSETNVDEAYEIDFDMTLPEALQRWKQFEGNSHTIDIDVTSSTRHLNANNSYSDP* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0301 867 SMART serkin_6 527 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0301 867 Gene3D Ribonuclease Inhibitor 3 295 IPR032675 -
Vra1g0301 867 Pfam Protein kinase domain 528 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0301 867 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 2 856 - -
Vra1g0301 867 SUPERFAMILY L domain-like 6 270 - -
Vra1g0301 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Vra1g0301 867 CDD STKc_IRAK 533 807 - -
Vra1g0301 867 Pfam Leucine rich repeat N-terminal domain 5 30 IPR013210 -
Vra1g0301 867 Pfam Leucine rich repeat N-terminal domain 301 336 IPR013210 -
Vra1g0301 867 Gene3D Ribonuclease Inhibitor 299 423 IPR032675 -
Vra1g0301 867 PANTHER OSJNBA0070M12.3 PROTEIN 2 856 - -
Vra1g0301 867 SUPERFAMILY Protein kinase-like (PK-like) 507 804 IPR011009 -
Vra1g0301 867 ProSitePatterns Protein kinases ATP-binding region signature. 533 555 IPR017441 GO:0005524
Vra1g0301 867 SUPERFAMILY L domain-like 300 405 - -
Vra1g0301 867 Gene3D Transferase(Phosphotransferase) domain 1 606 829 - -
Vra1g0301 867 Gene3D Phosphorylase Kinase; domain 1 494 604 - -
Vra1g0301 867 ProSiteProfiles Protein kinase domain profile. 527 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0301 Vra-Chr1 4426692 4429453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0301 37 807 Receptor kinase-like Gene Family AT5G07280 32.449 1.25e-81 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vra1g0301 Pkinase 4.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0301 - K00924 gmx:100788903 1344.72