Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0298 ATGGCGCAGCAGACACCACCAGCATTAGAGCAGGTCCAGTGTTTCGGCCGCAAGAAGACGGCGGTGGCAGTTACTTACTGCAAACGCGGCCGCGGCCTAATCAAGATCAACGGATGTCCTATTGAGCTCGTCGAGCCGGAGATCCTCCGCTTCAAGGCTTTCGAGCCCATCCTCCTCCTCGGCCGCCACCGTTTTGCCGGAGTTGACATGCGCATCCGTGTCAAGGGCGGTGGACATACCTCCCAGATCTACGCCATCCGTCAAAGCATCGCCAAGGCTCTCGTCGCCTACTACCAGAAGTACGTCGATGAGCAGTCCAAGAAGGAGATCAAAGACATCCTCGTCAGGTACGACCGCACACTCCTCGTTGCTGATCCTCGCCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGTGCTCGCGCCAGGTTCCAGAAATCCTACCGTTGA 447 0.5861 MAQQTPPALEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0298 148 Gene3D - 4 148 IPR014721 -
Vra1g0298 148 ProSitePatterns Ribosomal protein S9 signature. 76 94 IPR020574 GO:0003735|GO:0005840|GO:0006412
Vra1g0298 148 PANTHER RIBOSOMAL PROTEIN S9 5 148 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vra1g0298 148 SUPERFAMILY Ribosomal protein S5 domain 2-like 11 148 IPR020568 -
Vra1g0298 148 Pfam Ribosomal protein S9/S16 16 148 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vra1g0298 148 PANTHER - 5 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0298 Vra-Chr1 4398238 4399157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0298 5 148 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 89.583 2.73e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0298 K02960 - gmx:100527911 286.189