Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0291 ATGGCAGAGAGTTCTTCATCATTCGATGTGTCCACTTCTCCCACTAGCTACGATGTGTTTCTCAACTTCAGAGGAGAAGACACTCGTGAAAACTTCATTAGTCACCTTTATGCAGCGCTGGAGAGGAAGCACATCGAAGTATATATTGATTACAGACTAAAAAGAGGCGACGAAATTTCACCTGCACTGCAAACTGCAATAGAAGAATCAAAGATCTATGTTCTGGTTTTCTCCGAAAACTATGCATCTTCAACGTGGTGTTTGAATGAACTGATTAAGATACTGGATTGCAAGAAGAGATATGGAAGGGATGTGATACCAGTTTTCTACAAGGTGGATCCATCAACTGTCAGGAAGCAGGAAAAGAGATACAAAGAAGCATTCAAAGAGCATGAACTGCGGTTTAAGGAAGACATGGACAAAGTGCAAGGATGGAAGGACGCTCTAACCGAAGCTGCTGGACTCTCTGGCTGGGATTCAAACGTTATCAGGCTAGAATATGTTCTTGTTGAAGAAATTGTGGAAGATATTTTGAAAAAATTGAATTGTTATTATGTCACTTACGATCAAGGAATCATCGGCACTGAAAAACATATTGAAAGAATTCAATCCTTGTTGCATCTTGAGTCATCAGATATTCGGATCGTAGGAATTTGTGGCATGGGAGGAATAGGAAAAACTACCATTTCTGAGCAATTATATCACACATTGGCAAAGCAATTTGATTCCCACAGCCTTATTTTAGATGTTCAAGAAAAACTACAACGAGAGGGAATAGACAATATCAGAAGAAAATATCAGTCTGAACTTCTAAAGGAAGCATCATCCACTCGTTTATCATATTACAATGAAAGGATCAAACGATCAAAGGTCCTACTCATTCTTGATGATGTGACCGATTCAACTCTACTTAACAAATTAATAGGAGAACGTGATAGCTTTGGACAGGGCAGTAGAATCATTATGACCAGTAGAGACAGACAAGTGCTTAAAAATGCTGGAGCTAATGATATCTACGAACTTAAGGAGTTGAATTTTTATGATTCTCTGAAACTTTTTAATCTACATGCTTTTAAACAAAATTCTTCAGAAGAAATTACTTACATGGACTTGTCAATAAAGGTGTTGAGATATGCAAAAGGGATTCCGTTAACTCTCCAAATTTTGGGCTCATTGCTTTATGGAAGACAAAGAGCAGAATGGGAAAGTCAGTTGCAAAAGTTGGAAAAGGGCCAAGATGTTGAAACTTTTAATGTATTAAAATTAAGTTATGATGGGCTTGATGAGGAGCAGAAGAACATATTTCTTGAAATAGCTTGCTTTTACAGGGGACACAACGAGATTGTGGTAGTAGAAANACTANANGANTGTGGTTTNTCTTCTNNNATTGGAATGNATNTTCTCAAAGATANATGNCTNATATCTATCTTGGATGGTAGAATTGTGATGCACGATCTAATACAAGAAATGGGTCAAGAAATTGTTCGTAAAGAGTGTCCTCAACATCCTGGAAAACGTAGCCGATTATTCAAGGCTGACGAAATTCATGAGATTTTAAGAAATAACAAGGGATCAGATACAATACAATGTATATTACAAGATATAGACGAAATGGAAGGAGTTAAAGTACATGCAAAAGCTTTCAAAAAGATGAACAATCTTAGGATGCTTATGTTCTATTCTTATTCTTGTTCTTGGTATCGAGATGTGTTTCTTGAGTCATCTCTAGTAAGTCTGCCAGACACTTTGAAGATTCTTTATTGGTTTGGTTTTCATCAAAAATCTTTATCACGGAATTTTTGCTCACAAAATCTAGTGAGACTCGAAATGCCATATTGTCATCTTGAAAAACTGTGGAAAGATCAGAGTTTACCAAAGTTGAAAAGGCTCAACTTGAGTTATTCTCAGAAACTTACTAGAATACCAGACCTTTCCATGTCACCAAATATTGAAGAAATAATTCTGAATGATTGTTCAAAGTTGATTAAAGTTCACTCTTCCATATTACTCACCAAGCTCACTTCTTTACGTTTAGATAAATGTTATGATCTCAATAGTGTAATTGTTCCCAGCAATATTCTATACAGATCACCAGGATTGATTCTTCTTTCATCGTGTGAGAAGCTTAAAATGTTTTCAACCAGTGTACCTAGATTTCCTCATGTGAAACTGGAGCGTCAACGTGGAACTATCTCAAGATCCCTTCTTATGAAACCGGAGTATAAACCTGGAACCGTCTCAAGTTTCCCTCGTTTGATACGGCGGTCAAATAGACGTAGAGCTTTCCCAAGATCCTCTGTTAGGAATGGTCTGGGTGAAGGTACTTGCTATTGGCCGTGTAATGATACACATTATCCTCTCTCAAAAATATCCTTTCTCAGGGAAATTTTCTCAATTATTTTTGTGAAATATGAAGAAGAAAAAGAAGTGATTAATGATAATATATACGTATATGATGAAAGTCCGGTACAACTCATTGGAGGTGTGCCCTTAAACTTTCAAAGTCTCAAGAAGCTCTGTTTAATAGATCTCTCGCACTGTTCTTCCCTCACAATATTTCCATTTGACCTTTCTGAGATTAAATTCCTAAAGAAACTTTGTCTCAGTGGTTGCTCAAAATTGGAAAATTTCCCCGAGATTGAGAACACGATGGAAGATTTAGCGGTTCTCCTCTTAGACGGCACAGCCATACAGGCACTACCTTCATCCTTGTGGCGTTTGGTAGGGCTTCAAGAACTGAGTTTGCACTGTTGCAGGAATCTTGAGATAATTCCATCTTCCATTGGAAGCCTCACGAGACTATGTAAGTTAGACCTTACCTTCTGTGAATCACTTCAATCTTTTCCAAGCACCATTTTCAAATTGAAGTTGAGGAAACTTGATTTCTGTGGTTGCTTGAGGCTGAGGACCTTCCCAGAGATCATGGAGCCGGCACAAAGTTTTGCTCACATAAACTTAACAAAAACGCTTATCAAAGAACTCCCTTCCTCGTTTGGCAATTTGGTTAATCTTCGATCCCTGCAGCTCAACAATTGCTCTGATCTCGAGTCACTTCCAAACCCTATTGTTAATCTTAAGCTTCTCTGTAAACTTGATTGTTCCGGGTGTGCCAAATTAACAGAAATCCCAACTCACATTGGTCGCTTGTCTTCATTAATGGAAATGTCACTGAGAAAGAGCGGAATCGTGAACCTTCCCGAGAGCATGGCTCATCTTTCAAGCTTGAAATCGCTTGATTTAAGCGATTGTGAGAAGCTTGAATGCATCCCACATATTCCCCCATTCCTAGAACAACTGGTGGCATTGGATTGCCTATCCATTAGAAGAGTGATGACAAATTCTCTTGTTCCAAACCTCTCAGATTCAAAGGAGGGTGTCTTCAAATTTCATTTCACCAATGCCCAACAACTGAATTCAGGTGCTCGTGCAAGCATTGAGGAGGATGCTAGGCTTAGGATGACCGACGATGCATATGAGTCTGTGTGCTTCTGTTTTCCAGGGAGTGCAGTTCCTCATTGGTTCCCTTTTTGCAGCGAAGGACCTTCACTGACTATAAATCAAGATTTAAGTTTCTGCAGCGATGACAGACTCATTGGTTTCGCTTTGTGTGTGGTTTTTGGAGTGTTAGATACGAATGATATCAAAGGCAGGCGCGGTTCTTTTGTTTACAACCTAAAATTTGAATCTGATGATAATGGCACACAGATAATTCCAAATAATGATGTGTTAAAAAACTATTTCACATGGGATTGTAATCACAGAGTCCTTGATAAAGATCACACATTTATATGGAAATTTAACTTGGAGAGTCTAAGGAGGAGCGGCATGAACCTTAGGCTCAGTGATGCTTGCAGCTTCACTTTTGAGATCAGTCCATATGATTATAACTTTCAGTGGCCAGATTACGACTCAGTTTTGAATGAGTTAAGATCAGTTGTGACAATAAAAGAATGCGGAATGTGCCCTCTTTATAGCAGCCGAAGCAATGTTGCAGAATCTTCAAGCTAA 4008 0.383 MAESSSSFDVSTSPTSYDVFLNFRGEDTRENFISHLYAALERKHIEVYIDYRLKRGDEISPALQTAIEESKIYVLVFSENYASSTWCLNELIKILDCKKRYGRDVIPVFYKVDPSTVRKQEKRYKEAFKEHELRFKEDMDKVQGWKDALTEAAGLSGWDSNVIRLEYVLVEEIVEDILKKLNCYYVTYDQGIIGTEKHIERIQSLLHLESSDIRIVGICGMGGIGKTTISEQLYHTLAKQFDSHSLILDVQEKLQREGIDNIRRKYQSELLKEASSTRLSYYNERIKRSKVLLILDDVTDSTLLNKLIGERDSFGQGSRIIMTSRDRQVLKNAGANDIYELKELNFYDSLKLFNLHAFKQNSSEEITYMDLSIKVLRYAKGIPLTLQILGSLLYGRQRAEWESQLQKLEKGQDVETFNVLKLSYDGLDEEQKNIFLEIACFYRGHNEIVVVEXLXXCGXSSXIGMXXLKDXXLISILDGRIVMHDLIQEMGQEIVRKECPQHPGKRSRLFKADEIHEILRNNKGSDTIQCILQDIDEMEGVKVHAKAFKKMNNLRMLMFYSYSCSWYRDVFLESSLVSLPDTLKILYWFGFHQKSLSRNFCSQNLVRLEMPYCHLEKLWKDQSLPKLKRLNLSYSQKLTRIPDLSMSPNIEEIILNDCSKLIKVHSSILLTKLTSLRLDKCYDLNSVIVPSNILYRSPGLILLSSCEKLKMFSTSVPRFPHVKLERQRGTISRSLLMKPEYKPGTVSSFPRLIRRSNRRRAFPRSSVRNGLGEGTCYWPCNDTHYPLSKISFLREIFSIIFVKYEEEKEVINDNIYVYDESPVQLIGGVPLNFQSLKKLCLIDLSHCSSLTIFPFDLSEIKFLKKLCLSGCSKLENFPEIENTMEDLAVLLLDGTAIQALPSSLWRLVGLQELSLHCCRNLEIIPSSIGSLTRLCKLDLTFCESLQSFPSTIFKLKLRKLDFCGCLRLRTFPEIMEPAQSFAHINLTKTLIKELPSSFGNLVNLRSLQLNNCSDLESLPNPIVNLKLLCKLDCSGCAKLTEIPTHIGRLSSLMEMSLRKSGIVNLPESMAHLSSLKSLDLSDCEKLECIPHIPPFLEQLVALDCLSIRRVMTNSLVPNLSDSKEGVFKFHFTNAQQLNSGARASIEEDARLRMTDDAYESVCFCFPGSAVPHWFPFCSEGPSLTINQDLSFCSDDRLIGFALCVVFGVLDTNDIKGRRGSFVYNLKFESDDNGTQIIPNNDVLKNYFTWDCNHRVLDKDHTFIWKFNLESLRRSGMNLRLSDACSFTFEISPYDYNFQWPDYDSVLNELRSVVTIKECGMCPLYSSRSNVAESSS* 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0291 1335 Pfam C-JID domain 1165 1326 IPR045344 -
Vra1g0291 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 436 IPR027417 -
Vra1g0291 1335 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 158 IPR035897 -
Vra1g0291 1335 Gene3D Ribonuclease Inhibitor 813 954 IPR032675 -
Vra1g0291 1335 SUPERFAMILY L domain-like 482 1098 - -
Vra1g0291 1335 Gene3D - 14 186 IPR035897 -
Vra1g0291 1335 Pfam TIR domain 17 182 IPR000157 GO:0007165
Vra1g0291 1335 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Vra1g0291 1335 Pfam NB-ARC domain 196 413 IPR002182 GO:0043531
Vra1g0291 1335 PRINTS Disease resistance protein signature 215 230 - -
Vra1g0291 1335 PRINTS Disease resistance protein signature 285 299 - -
Vra1g0291 1335 PRINTS Disease resistance protein signature 379 393 - -
Vra1g0291 1335 PRINTS Disease resistance protein signature 834 850 - -
Vra1g0291 1335 Gene3D - 344 428 IPR042197 -
Vra1g0291 1335 SMART till_3 16 155 IPR000157 GO:0007165
Vra1g0291 1335 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 711 IPR044974 GO:0006952
Vra1g0291 1335 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 910 1207 IPR044974 GO:0006952
Vra1g0291 1335 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 835 924 IPR044974 GO:0006952
Vra1g0291 1335 Gene3D - 187 339 IPR027417 -
Vra1g0291 1335 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 910 1207 - -
Vra1g0291 1335 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 835 924 - -
Vra1g0291 1335 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 711 - -
Vra1g0291 1335 Gene3D Ribonuclease Inhibitor 955 1115 IPR032675 -
Vra1g0291 1335 Gene3D Ribonuclease Inhibitor 532 733 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0291 Vra-Chr1 4350369 4357667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0291 825 913 WRKY Transcription Factor Family AT4G12020 37.079 3.93e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0291 - - var:108318722 2116.27