Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0290 ATGGCAGAGAGTTCTTCGTCATTAGCTGTGTCCACTTCTCCCACTAAGTATGATGTGTTTCTGAGCTTCAGAGGAGAAGATACGCGTTACAATTTCATCAGTCACTTTTATGACGCACTGCACAGGAACCACATCGAAGCATATATGGATCAGAGATTACAAAGAGGCGAAGAAATTTCGCCTGCACTCCAAACTGCGATAGAAGAATCAAAGATCTATGTCCTCGTTTTCTCCGAAAACTATGCATCTTCCACGTGGTGCTTGAATGAACTGATTAAGATACTTAACTGCAAGAAGATATATGAAAGGGATGTGATACCTGTTTTCTACAAAGTGGATCCATCAACTGTCAGGAAGCAGGAAGAAAGATACAAAGCAGCTTTCGATGAGCATGAACAGCGGTTTAAAGACGACATGGACAAAGTGCAAAGATGGAAGGATGCTCTAACCGAAGCTTCTGGACTCTCCGGTTGGGATTCAAACGTTATCAGGTCAGAAAACACACTTGTTGAAGAAATTGTGAAAGATATTGTGAAAAAATTGGATCTTTATTCCATTAGTTATGATCAAGGAATTATCGGCATTGATAAACATATTGAAAGAATTCGATTCTTGATGCATTTTGAGTCAACAGATATTCGGATCATAGGAATTTGTGGCATGGGAGGAATAGGAAAAACTACAATTTCTGAACAAATATATCACACATTTGCAAAGCAATTTGATTCCAGAAGTCTTGTTTTAGACACTCAACAAAAAATAGAAAGAGATGGAATAGACACTGTCAGAGAAAAATACATGTCCGAGTACAGTGAAAGACTCAAACGAAAGAAGATTCTCATAATTCTTGATGATGTTACCGATTCAGTTCAACCTAAACAATTGTTAGGAAGGTGTGATAGTTTCGGACAAGGCAGTAGAATCATTATAACCAGCAGAGACAAACAAGTGTTAAAGAATGTTGGAGCTGATGACATCTACGAAGTTGAGAAGTTGAATGAACTCAATTCCCTAAAACTTTTTACTTTACATGCTTTTAAACAAAACTCTTCACAGGAAACAACGTACATGGACTTGGTAGAAGAGGTGTTGAGATATGCCAAAGGAATTCCATTAGCTCTCCAAATTTTGGGCTCATTACTTTATGGCAGAACAAGAGAAGCATGGGAAAGTGAGTTACAAAAGTTGAAAAAATGCCAACATCTTAAAATTTTTAGTATATTAAAATTAAGTTATGATGGGCTTGATGACGAGGAGAAGAATATATTTCTTGACATAACTTGCTTTTATAGGGGACACCACGAGAGTGAGGTAGTAGAAAGACTAGATGACTGTGATTTTTCTTCTACGATTGGAATGGATGTTCTCAAAGACAGATGTCTAATATCTATCTCTAATGGTAGAATTGAAATGCACGATCTAATACAAGAAATGGGTAAAGAAATTGTTCGTCAAGAGTGTCCTCAATATCATGAAAAACGCAGTCGGTTGTTTAAGGTTAACGAAATTCATGAGGTTTTAAAAAAGAACAAGGGGTTAGATGCAATTCAGTGTATCTTACTACATTTGAGGGAAATAAAAGAAGTTATAATACATGGACAAGCTTTCGAAAAGATGGATAATCTTAGGATGCTTATAGTCAATGATTATGAAGATCTACACAAATCCAAAGTGGTTCTTGCATCATCTCTTGTAAGTCTGCCAGACACTTTAAAGATTCTTTTTTGGAAAGATTTTCCTCAAAGATCTTTACCACCGAACTTTTGTCCAGAAAATCTAGTGAGACTCGAAATGCCAAACTGCCATCTTGAACAACTTTGGGAAGAAGATCAGAGTTTACCCAAGTTGAAAAGGCTCAACCTGAGTTATTCTCAGAAACTTACTAGAATACAAGACCTTTCCCTGTCCCCAAATATTGAAGAAATAATTCTGAATGATTGTCCAAAGTTGATTAAAGTTCACTCTTCCATATTACTCACCAAGCTCACTTGTTTAAGTTTAGATAGATGTCATAATCTCAATAGTGTAACTGTTCCCTGCAATATTCTATCCAGATCACCAGGATACATTAATCTTTCCTGGTGTCCCAAGCTTGTAATGTTTTCAATCGGTCAAACCCAAATATGTTATTCTCCACCATCGTCATCATCAATCTGTTCAATGTTCCCTCATGCGAAACTGGCGAGTCAATTGCATCATTCCATAAAGGCGAACTTGGCTAGACGTAAAAATCTCAGAAGATCCTGTTACAGTCCAATTTTCTCCATTACTTTTGACCGATCTTGGGAAGCAGATGAAGAAAAACAATTGACTAATAATAATAAATACGCATATGATGAAATGCGACTCACTGGAGGTCTACCCTTAAACTTTCTCAAGAATCTCTGTTTCATAAATCTCTCGAACTGTTTTTCCCTTACAATATTTCCATTTGACCTTTCTGAGATGAAATTCCTAAAGAAACTTTATCTCTGTGGTTGCTTAAAATTGCAAAATTTCCCCGAGGGCACAATGGAAAATTTAGCAGTAGGGCTTCAAGAACTGAGTTTGCGCAGTTGCTGGAATCTTGAGAGTATTCCATCTTCCATTGGAAGGCTCACCAGACTATGCACGTTAGACCTTTCCTACTGTGAATCACTTCAAACTTTTCCAAGCACCATTTTCAAATTGAAGTTGAGGAAACTTGATTTGTGTGGTTGCTTAAGGTTGAGGACCTTCCCAGAGATCACGGAGCAGACACAAACTTTTGCTCACATAAACTTAACAGAAACGGCTATCAAAGATCTGCCTTCCTCATTTGGCAATTTAGTTAATCTTCGATCCCTGCAGCTCAACAAATGCATGGATCTTGAATCACTCCCAAACTCCATTGTTAATCTAAAACATCTCTGTAAACTTGATTGTTCGGGGTGTGCCAAATTAACAGAAATCCCAACACACATTGGTAGCCTGTCGTCATTAATGGAACTGTCACTGAGTGAGAGCGGAATCGTGAACCTTCCTGAAAGCATTGCTCATCTTTTAAGCTTGAAATCACTTGATTTAAGTGGCTGCAAAAATCTTGAATGCATCCCACAGATTCCACCGTCTCTAAACCAACTGGTGGCATTAGATAGCCTATCCATTAGACAAGTGATGTCAAATCGAAACCTCTCAGAGTCAAAGGAGGGTGTCTTCAAATTTTATTTCACCAATGCCCAACAACTGGATTCAGGTGCTCGTGCTAACATTGAGGAAGATGCAAGGCTCAGGATGACCGATGATACATATAAGTGTGTGGTCTTCTGTTTTCCAGGGAGTGCAGTTCCTCATTGGTTCCCTTTTCGCAATAAAGGACCTTCAGTGAGTATAAATGAAGATTTAAGTTTCTGCAGCGATGACAGGCTCATTGGTTTCACTTTGTGTGTGGTTTTTGGATTGTTAGATACGAATGATATTAAAAGCAGATACGGTTCTTTTGGCTACAACCTAAAATTTGAATGTGATGATGATGGCACACAGATAATTCCAAATAATGATGTGTTAAACAACTATTTCACATGGGGTTATAGTCCCGGACTCCTTGATAAAGATCACATATTTATGTGGAAATTTAACTTGGAGAGTATAAGGAGGAGCGGCATGAACCTTAGGCTCAGTGATGCTCGCAGCTTCACTTTTGAGATCAGTCCATATGATTATAACTTTCAGTGGCCAGATTACGACTCAGTTGTGAATGAGTTAAAATCAGTTGTGACAATAAAAGAATGCGGAATGTGCCCTCTTTATAGCAGCCGAAGCAATGTTGCAGAGTCTTCAAGGGAAACAAAGGAGGATAGGAAGAGGAAGGCCGAAAGCGACTTAGTGGGCTAG 3852 0.3824 MAESSSSLAVSTSPTKYDVFLSFRGEDTRYNFISHFYDALHRNHIEAYMDQRLQRGEEISPALQTAIEESKIYVLVFSENYASSTWCLNELIKILNCKKIYERDVIPVFYKVDPSTVRKQEERYKAAFDEHEQRFKDDMDKVQRWKDALTEASGLSGWDSNVIRSENTLVEEIVKDIVKKLDLYSISYDQGIIGIDKHIERIRFLMHFESTDIRIIGICGMGGIGKTTISEQIYHTFAKQFDSRSLVLDTQQKIERDGIDTVREKYMSEYSERLKRKKILIILDDVTDSVQPKQLLGRCDSFGQGSRIIITSRDKQVLKNVGADDIYEVEKLNELNSLKLFTLHAFKQNSSQETTYMDLVEEVLRYAKGIPLALQILGSLLYGRTREAWESELQKLKKCQHLKIFSILKLSYDGLDDEEKNIFLDITCFYRGHHESEVVERLDDCDFSSTIGMDVLKDRCLISISNGRIEMHDLIQEMGKEIVRQECPQYHEKRSRLFKVNEIHEVLKKNKGLDAIQCILLHLREIKEVIIHGQAFEKMDNLRMLIVNDYEDLHKSKVVLASSLVSLPDTLKILFWKDFPQRSLPPNFCPENLVRLEMPNCHLEQLWEEDQSLPKLKRLNLSYSQKLTRIQDLSLSPNIEEIILNDCPKLIKVHSSILLTKLTCLSLDRCHNLNSVTVPCNILSRSPGYINLSWCPKLVMFSIGQTQICYSPPSSSSICSMFPHAKLASQLHHSIKANLARRKNLRRSCYSPIFSITFDRSWEADEEKQLTNNNKYAYDEMRLTGGLPLNFLKNLCFINLSNCFSLTIFPFDLSEMKFLKKLYLCGCLKLQNFPEGTMENLAVGLQELSLRSCWNLESIPSSIGRLTRLCTLDLSYCESLQTFPSTIFKLKLRKLDLCGCLRLRTFPEITEQTQTFAHINLTETAIKDLPSSFGNLVNLRSLQLNKCMDLESLPNSIVNLKHLCKLDCSGCAKLTEIPTHIGSLSSLMELSLSESGIVNLPESIAHLLSLKSLDLSGCKNLECIPQIPPSLNQLVALDSLSIRQVMSNRNLSESKEGVFKFYFTNAQQLDSGARANIEEDARLRMTDDTYKCVVFCFPGSAVPHWFPFRNKGPSVSINEDLSFCSDDRLIGFTLCVVFGLLDTNDIKSRYGSFGYNLKFECDDDGTQIIPNNDVLNNYFTWGYSPGLLDKDHIFMWKFNLESIRRSGMNLRLSDARSFTFEISPYDYNFQWPDYDSVVNELKSVVTIKECGMCPLYSSRSNVAESSRETKEDRKRKAESDLVG* 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0290 1283 Gene3D Ribonuclease Inhibitor 890 1053 IPR032675 -
Vra1g0290 1283 Gene3D Ribonuclease Inhibitor 484 711 IPR032675 -
Vra1g0290 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 426 IPR027417 -
Vra1g0290 1283 Gene3D - 331 416 IPR042197 -
Vra1g0290 1283 Gene3D - 187 328 IPR027417 -
Vra1g0290 1283 Gene3D - 14 186 IPR035897 -
Vra1g0290 1283 SMART till_3 16 155 IPR000157 GO:0007165
Vra1g0290 1283 Pfam NB-ARC domain 197 412 IPR002182 GO:0043531
Vra1g0290 1283 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 158 IPR035897 -
Vra1g0290 1283 PRINTS Disease resistance protein signature 215 230 - -
Vra1g0290 1283 PRINTS Disease resistance protein signature 273 287 - -
Vra1g0290 1283 PRINTS Disease resistance protein signature 367 381 - -
Vra1g0290 1283 PRINTS Disease resistance protein signature 1005 1021 - -
Vra1g0290 1283 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 686 IPR044974 GO:0006952
Vra1g0290 1283 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 843 1139 IPR044974 GO:0006952
Vra1g0290 1283 Pfam TIR domain 16 182 IPR000157 GO:0007165
Vra1g0290 1283 MobiDBLite consensus disorder prediction 1261 1283 - -
Vra1g0290 1283 Pfam C-JID domain 1097 1258 IPR045344 -
Vra1g0290 1283 MobiDBLite consensus disorder prediction 1264 1283 - -
Vra1g0290 1283 SUPERFAMILY RNI-like 787 1047 - -
Vra1g0290 1283 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Vra1g0290 1283 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 686 - -
Vra1g0290 1283 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 843 1139 - -
Vra1g0290 1283 SUPERFAMILY L domain-like 471 713 - -
Vra1g0290 1283 Gene3D Ribonuclease Inhibitor 768 878 IPR032675 -
Vra1g0290 1283 SUPERFAMILY "Winged helix" DNA-binding domain 403 508 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0290 Vra-Chr1 4332938 4338502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0290 789 942 WRKY Transcription Factor Family AT4G12020 32.948 1.10e-11 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0290 - - var:108318722 1788.47