Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0289 ATGGCAGAGAGTTCTTCGTCATTAGCTGTGCCCACTTCTCCCACTAAGTATGATGTGTTTCTGAGCTTCAGAGGGGAAGACACGCGTTACAACTTCATCAGTCACCTTTATGATGCGCTACACAGGAACCGGATCAAAGCATATAGAGATGACAGACTACAAAGGGGCGAAGAAATTTCGCCTGCACTCCAAACTGCTATAGAAGAATCAAAGATCTATGTCCTCGTTTTCTCCGAAAACTATGCATCTTCGACCTGGTGCTTGAATGAACTGACTAAGATACTGAACTGCAAGAAGATATATGAAAGGGACGTGATACCGGTTTTTTACAAAGTAGATCCATCAACTGTCAGGAAGCAGGAAGAAAGATACAAAGCAGCATTCGAAGAGTACGAACAGCGGTTTAAAGACGACATGGACAAAGTGCAAGGATGGAAGGATGCTCTAACTGAAGCTGCTGGACTCTCCGGCTGGGATTCAAACGTTATCTGGTCAGAAAACATACTTGTTGAAGAAATTGTGAAAGATATTGTGAAAAAATTGGATCTTTATTCCAGTAGTTATGATCAAGGAATTATCGGCATTGAAAAACATATTGAAAGAATTCGGTTCTTGATGCATTTTGAGTCATCAGATATTCGGATCATAGGAATTTGTGACATGGGAGGAATAGGAAAAACTACAATTTCTGAACAAATATATCACACATTGGGAATGCAATTTGATTCCAGAAGTCTTGTTTTAGACACTAAAAGAAAAATAGAACGAGATGGAATAGACATTGTCAGAAAAAAATATATGTCTGAGTACAGTGAAAGACTCAAACGAATGAGGATTCTTATCATTCTTGATGATGTTACCGATTCAGTTCAACTTAAACAATTGCTAGGAAGGCATGATAGTTTTGGACAAGGCAGTAGAATCATTATAACCAGTAGAGACAGACAAGTGTTAAAGAATGTTGGAGCTGATGACATCTACGATGTTAAGGAGTTGAATGATCTTGATTCTCTAAAACTTTTTAGTTTACATGCTTTTAAACAAAACTCTTCACAAGAAATAACGTACAAGGACTTGACAGAAAAGGTGTTGAGATATGCAAAAGGAATTCCATTAGTTCTCCAAACTTTGGGTTCATTACTTTATGGTAGAACAAGAGAAGCATGGGAAAGTCAATTACAAAAGTTGGAAAAATGCCAACATCTTGAAATTTTTAATGTATTGAAATTAAGTTATGATGGACTTGACGAGGAGGAGAAGAATATATTTCTTGACATCGCTTGCTTTTACAGGGGAGACGAGGAAAGTGAGGTAGTAGAAAGACTAGATGAATGTGGTTTTTCTTCTAAGATTGGAATGGATGTTCTCAAAGACAGATGTCTAATATCTATCTTTGATGGTAGAATTGTGATGCACGATCTATTACAAGAAATGGGTCAAGAAATTGTTCGTAAAGAGTGTCCTGAATATCCTGGAAAACGCAGTCGATTGTTCAAGGATGAGGAAATTCATGAGGTTTTAAAAAAGAACAAGGGGTCAGATGCAATTCAGTGTATCTTATTAGGTACTTGGGAAATAAAAAAAGATGTTATAGTAGATGGACAAGCTTTCCAAAAGATGGATAATCTTAGGATGCTTATGCTCTCTGATTATTTATCTTATGAGCCTCAAAGCGAATCCAGAGTGTTTCTTGCATCGTCTCTTGTAACTCTACCAGACACTTTAAAGATTCTTTATTGGAAAGGTTTCCCTCAAAGATCTTTACCACCGAACTTTTGCCCAGAAAATCTAGTGAGACTCGAAATGCCACACTGTCATCTTGAACAACTTTGGGAAGAAGATCAGAGTTTACCCAAGTTGAAAAGGCTCGACCTGAGTTGGTCTTCGAAACTTACTAGAATACAAGATCTTTCCATGTCACCAAATATTGAAGAAATAATTCTCAATTATTGTCGAAAGTTGATTAAAGTTCACTCTTCCATATTACTCACCAAGCTCAGTTATTTAAGTTTAGATGAGTGTCATAATCTCAAAAGTGTAATAATTCCCAGCAATATTCTAACCAAATCACCAGGATTGATTCTTCTTTCCCGGTGTGGGGAGCTTGAAATGTTTTCAACCACTCAAACCCAAATATATTATTCTCCACCATCATCATCATTAATCGGTCCTCATGTCAAACTGCGGCGTCAACGTCGAAATTCCTTTAACGAGCTCCAGTCTTTTGCTAGCCTTCCCTCGAGATTCTATTCCAATGAAATTTTCTCCATTACTTTTGACCGATATTGGGGAACAGATGAAGAAAAAGAAGTAACTAATGATGAAATGCCGATACAACTCACTGGAGGTGTGTCGTTAAACTTAAGTCTCAAGAAGCTCTGTTTAATAGATCTCTCGCACTGTTCTTCCCTCACAACATTTCCATTTGTCCTTTCTGAGATGAAATTCCTAAAGAAACTTTTTCTCAGTGGTTGCTCAAAATTGGAAAATTTCCCCGAGATTGAGGACACGATGGAAAATTTAGCGATTCTAAGCTTAAACAACACAAGCATAAAGGCACTCCCTTCATCCTTGGGGCGTTTGGTAGGGCTTCAAGAACTGAATTTGTACGGTTGCAGGAATCTTGAGATTATTCCATCTTCCATTGGAAGGCTCACCAGACTATGCAAGTTACACCTTACCAACTGTCATTCACTTCAAACTTTTCCAAACACCATTTTCAAATTGAAGTTGAGGAAACTTGATTTGTATCGTTGCTTAAGGTTGAGGACATTCCCAAAGATCACCGAGCAGGCACAAACTTTTTCTTACATTGACTTATCAGAAACTGCTATCAAAGAACTGCCTTCCTCATTTGACAATTTGGTTAGTCTTCGATCCCTGCAGCTCAACAAATGCAGGAATCTCGAGTCACTTCCAAACTCCATTGTTAATCTAAAGCATCTCTGTAAACTTGATTGTTCGGGGTGTCACAAATTAACAGAAATCCCAAGACACATAGGTCGGTTGACGTCATTAATGGAACTGTTACTGAATGATAGCGGAATCGTGAACCTTCCTGAGAGCATTGCTCATCTTTCGAGCTTGAAATCGCTTGATTTGAGCGATTGCAAAAGGCTTGAGTGCATCCCACAGATTCCATCATGTCTAAAACAACTGGTGGCATTGGATTGCCCATCCATTAGACAAGTGATGTCAAATCGAAACCTCTCAGGGTCGAAGGAGGGTGTCTTCAAATTTCATTTCACCAATGCCCAACAACTGGATTCAGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGCTCAGGATGACCGACTATGCATATAGGTCTGTGTTCTTCTGTTATCCAGGGACTGCAATTCCTCATTGGTTCCCCTTTCGTGGGAAGGGATGCTCTGTGACTATAAATGAAGATTTAAGTTTCTGCAGTGATGACAGACTCATTGGTTTCGCTTTGTGTGTGGCTTTTGGATTGTTTGATAGCAATGATATTAATGGTAGACGTGGTTCTTTTAGATACCGCCTAAAATTTGAATGTGATGATTATGGCACACAGATTATTCCAAATAATGATCTGTTTCAGAACTATTTCAAATGGAATGGTAAAAACAGATTTGTCAATCAAGATCACACATTCATGTGGAAATTTAACTTGGAGAGTCTAAGGAGGAGCTGCATGAACCTTAGGCTCTGTGATGCTTGCAGATTCACTTTTGAGATCATTCGATATTACGGAGAAATGGTGAGAGAGTTCCGATCAGTTGTGACAATAAAAGAATGCGGCTTATGCCCTCTTTATAGAAGCGGAAGCAATGTTGGAGAGTCTTCAATGGAAACAAAGGAAGACAGCAAGAGGAAGGCAGAAAGCTACTTATAG 3879 0.3875 MAESSSSLAVPTSPTKYDVFLSFRGEDTRYNFISHLYDALHRNRIKAYRDDRLQRGEEISPALQTAIEESKIYVLVFSENYASSTWCLNELTKILNCKKIYERDVIPVFYKVDPSTVRKQEERYKAAFEEYEQRFKDDMDKVQGWKDALTEAAGLSGWDSNVIWSENILVEEIVKDIVKKLDLYSSSYDQGIIGIEKHIERIRFLMHFESSDIRIIGICDMGGIGKTTISEQIYHTLGMQFDSRSLVLDTKRKIERDGIDIVRKKYMSEYSERLKRMRILIILDDVTDSVQLKQLLGRHDSFGQGSRIIITSRDRQVLKNVGADDIYDVKELNDLDSLKLFSLHAFKQNSSQEITYKDLTEKVLRYAKGIPLVLQTLGSLLYGRTREAWESQLQKLEKCQHLEIFNVLKLSYDGLDEEEKNIFLDIACFYRGDEESEVVERLDECGFSSKIGMDVLKDRCLISIFDGRIVMHDLLQEMGQEIVRKECPEYPGKRSRLFKDEEIHEVLKKNKGSDAIQCILLGTWEIKKDVIVDGQAFQKMDNLRMLMLSDYLSYEPQSESRVFLASSLVTLPDTLKILYWKGFPQRSLPPNFCPENLVRLEMPHCHLEQLWEEDQSLPKLKRLDLSWSSKLTRIQDLSMSPNIEEIILNYCRKLIKVHSSILLTKLSYLSLDECHNLKSVIIPSNILTKSPGLILLSRCGELEMFSTTQTQIYYSPPSSSLIGPHVKLRRQRRNSFNELQSFASLPSRFYSNEIFSITFDRYWGTDEEKEVTNDEMPIQLTGGVSLNLSLKKLCLIDLSHCSSLTTFPFVLSEMKFLKKLFLSGCSKLENFPEIEDTMENLAILSLNNTSIKALPSSLGRLVGLQELNLYGCRNLEIIPSSIGRLTRLCKLHLTNCHSLQTFPNTIFKLKLRKLDLYRCLRLRTFPKITEQAQTFSYIDLSETAIKELPSSFDNLVSLRSLQLNKCRNLESLPNSIVNLKHLCKLDCSGCHKLTEIPRHIGRLTSLMELLLNDSGIVNLPESIAHLSSLKSLDLSDCKRLECIPQIPSCLKQLVALDCPSIRQVMSNRNLSGSKEGVFKFHFTNAQQLDSGARANIEEDARLRMTDYAYRSVFFCYPGTAIPHWFPFRGKGCSVTINEDLSFCSDDRLIGFALCVAFGLFDSNDINGRRGSFRYRLKFECDDYGTQIIPNNDLFQNYFKWNGKNRFVNQDHTFMWKFNLESLRRSCMNLRLCDACRFTFEIIRYYGEMVREFRSVVTIKECGLCPLYRSGSNVGESSMETKEDSKRKAESYL* 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0289 1292 Gene3D - 12 185 IPR035897 -
Vra1g0289 1292 Pfam C-JID domain 1116 1269 IPR045344 -
Vra1g0289 1292 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 708 IPR044974 GO:0006952
Vra1g0289 1292 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 864 1071 IPR044974 GO:0006952
Vra1g0289 1292 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Vra1g0289 1292 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 158 IPR035897 -
Vra1g0289 1292 MobiDBLite consensus disorder prediction 1272 1292 - -
Vra1g0289 1292 MobiDBLite consensus disorder prediction 1278 1292 - -
Vra1g0289 1292 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 708 - -
Vra1g0289 1292 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 864 1071 - -
Vra1g0289 1292 SUPERFAMILY L domain-like 470 832 - -
Vra1g0289 1292 SUPERFAMILY L domain-like 787 1060 - -
Vra1g0289 1292 Gene3D - 186 327 IPR027417 -
Vra1g0289 1292 SMART till_3 16 155 IPR000157 GO:0007165
Vra1g0289 1292 Pfam TIR domain 16 187 IPR000157 GO:0007165
Vra1g0289 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 426 IPR027417 -
Vra1g0289 1292 Pfam NB-ARC domain 196 401 IPR002182 GO:0043531
Vra1g0289 1292 Gene3D - 331 416 IPR042197 -
Vra1g0289 1292 Gene3D Ribonuclease Inhibitor 531 711 IPR032675 -
Vra1g0289 1292 Gene3D Ribonuclease Inhibitor 911 1075 IPR032675 -
Vra1g0289 1292 Gene3D Ribonuclease Inhibitor 778 910 IPR032675 -
Vra1g0289 1292 PRINTS Disease resistance protein signature 215 230 - -
Vra1g0289 1292 PRINTS Disease resistance protein signature 273 287 - -
Vra1g0289 1292 PRINTS Disease resistance protein signature 367 381 - -
Vra1g0289 1292 PRINTS Disease resistance protein signature 788 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0289 Vra-Chr1 4324115 4331212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0289 791 961 WRKY Transcription Factor Family AT4G12020 38.596 5.78e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0289 - - var:108318722 1811.58