Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0288 ATGTCAGGAAGTTCTTCATCATTCGCCATGTGTACTTCTCTTACTAGGTACGATGTGTTTCTGAATTTCAGAGGAGATGACACGCGTGACAACTTCATTAGTCACCTTTACGCAGCATTGCAAAGGAAGCACGTTGAAGGATATATTGATTACAGGCTACTCAGGGGAGAAGAAATTTCACCTGCACTGCAAACTGCAATAGAAGAATCAAAGATATATGTCCTGGTTTTCTCTGAAAACTATGCATCTTCGACGTGGTGCTTGAATGAACTGACTAAAATACTGGATTGCAAGAAGAAATATGGAAGGGATGTGATACCCGTTTTCTACAAGGTTGATCCATCAACTGTCAGAAAACAGGAAAAGAGATACAAAGAAGCATTTGAAGAGCATGAACTACGGTTTAGGGAAAACATGAACAAAGTCCAAGGATGGAAGGATGCTCTAACGGAAGCTGCTGGACTCTCCGGCTGGGATTCAAACGTCACCAGGCCAGAATACAAACTTGTTGAAGAAATTGTGGAAGATATTTTAAGAAAACTAAATCGGTATTCCATCAGTTATGATAAAAAAATCATCGGTATTGAAAAACACATAGAAGGAATTCAGTCCTTGTTGCATTTAGAGTCACCAGATGTTAGGATCATAGGAATTTGTGGCATGGGAGGAATAGGAAAAACTACGATTTCTGAGCAATTATATCACACATTGGCAATGCAATTTGATTCCCATAGTCTTATTTTAGATGTTCAAGAAAAACTACAAAAAGAGGGAATATATAATATCATAAACAAATATAAGTCTGAGCTTCTAAAGGAAACATCATCCACTCATTTATCATATTACAATGGAAGACTCAAACGAACAAAGGTCCTCCTCATTCTTGATGATGTGACAGATTCAACTCAACTTAACAAATTAATGGGAGAACGTGATAGCTTTGGGCAAGGCAGTAGAATCATTATGACCAGTAGAGATAGACAAGTGCTTAAGAATGCTGGGGCTGATGATATCTACGAACTTAAGGAGTTGAATTTTCATGATTCTCTAAAACTTTTTAACTTACATGCTTTTANACAAAATTCTTCANAAGAAATTACTTNCATGGACTTGTCAGTAAAGGTGTTGCGATATGCAANAGGNGTTCCNTTAGTTCTCCAAATTTTGGGTTCATTGTTATATGGCAGACAAAGAGAAGCATGGGAAAGTCAGTTGCAAAACTTGGAGAAGTGTCAAGATCATAATATTTTCAATGTATTAAAATTAAGTTACGATGGGCTCCGTGAGGAGGAGAAGAATATATTTCTTGACATTGCTTGCTTTTATAGAGGACACGGGGAAATTGTAGTAGCAGAAACACTAGATGATTGTGGTTTCTCTTCTAAGATCGGAATGGATGTTCTCAAAGATAAATGCCTCATATCTATTTCGGATGGTAGAATTGTGATGCACGATCTAATACAAGAAATTGTTCGTAAAGAGTGTCCCGAGCATCCTGGAAAACGTAGCAGATTGTTCAAGGCTGAAGAAATTCGTGATGTCTTAAGAAAGAACAAGGTACATTTTATCATTACTCAATTGAACAAGGGTCAGATGATGCTTATGATCTTTCCTTATTGTTGGGGTCAAATCATATCAAACGTGGTTCGTGAATCATCTCTAGTAAGTTTGCCACACACTTTGAAGATTCTTTGTTGGAATAATTTCCCTCAAAGATCCTTGCCATCAAATCTTTGCCTACAAAATCTAGTGAGACTTGAAATGCCAAAGTGCCGTCTTGAACAACTTTGGGAAAGAGATCAGTATTTACCCAAGTTGAAAAGGCTCAACCTGAGTTATTCTCCAAAACTTACTAGAATACCAGACCTTTCTCTTTCACCAAATATTAAAGAAATAATTCTGAGTCATTGTGAAAGGTTGATTCAAGTTCACTCTTCCAGATTCCTCAGCAAGCTCAGTTGTTTATTGTTAGATGGTTGTTATGGTCTGAAGAGTGTAACAATTCCCAGCAATATTCTAACCAGATCACCAGGATTGATTCTACTTTCCGATTGTCACGAGCTTGAAATGTTTCAAACATATGAAACTCAACCGTGGCCTTTTACATTATTATCATCAATGTGGGAAAGAGACAACCCTAGATATGGTCGTTATATACCTTTCACAAGACTCGATCCTAGTGAAATCTTCTCAATTACCTTTGATAGATACGAGGAGGAAGAAAAAGAAGTGATTAATAATCATATATACTTACAATGTGATGAAGTGCTGACGAAACTAAGAGAAGGTGTACCCTTAAACTTTCAAAGTCTGAAGAAATTCTGTTTCTTAGATGTGTCTTACTGTTCTTCCCTTTCAACCTTTCCATGTGACCTTTCTGAGACGAAATTCCTGAAGCAACTTTGTCTCCGTGGTTGCTCAAAATTGGAAAATTTCCCCGAAATTGAGGACACGGTGGAAGGTCTAGCGGTTCTCATCTTAGACNNCACAGCCATACAGGCACTACCTTCATCCTTGTGGCGTTTGGTAGGGCTTGAACAACTGAGTTTGCGAGGTTGCAAGAATCTTGAGATTATTCCATCTTCCATTGGAAGCCTCACCAGACTATGCAAGTTAGACCTTACCTCNTGTCAATCACTTCAAACTTTTCCAAACACCATTTTCAAATTGAAGTTGAGGATACTTGATTTNTGTGGGTGTTTAAGGTTGAGCACCTTCCCAGAGATCACGGAGCAGGCACAAACTTTTTCTCACATCAACTTAAAAGAAACNGCTATCAAAGAACTGCCTTCCTCATTTGGCAATTTGGTTAATCTTCGATCCCTGCAGCTCAACNAATGCACTGATCTCGAATCACTCCCAAACTCTATTGTTAATCTAAAGCGTCTCTGTAAACTTGATTGTTCGGGTTGTGCCAAATTAACAGAAATCCCAACACACATTGGTCGTTTGTCTTCATTAATGGAAATGTCACTGAGAAAGAGTGGAATAGTGAACCTTCCCGAAAGCATGGCTCATCTTTCAAGCTTGAAATCGCTTGATTTAAGCGATTGCAAAAAGCTTGAATGCATCCCACCTATTCCACCATTTCTAAAACAACTCGTAGCATTGGATTGTCCATCCATTAGAAGAGTGATGCCAAATTCTCTTGTTCGAAACCTCTCAGAGTCGAAGGAGGGTGTCTTCAAATTTCATTTCACCAACACCCAACAACTGGATTCAGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGCTCAGAATGACCGACGATGCATATAGGTCTGTATTCTTCTGTTTTCCAGGGACTGCAGTTCCTCATTGGTTCCCTTTTCGTGGTAATGGACCTTCAGTGAGTATAAATGAAGATTTAAGTTTCTGCAGCGACGACAGGCTCATTGGTTTCGCTTTGTGTGTTGTTTTTGAACTGTTAGATACGAATGATATTGAAGGTAGATACGGTTCTTTTAGTTACAACTTAAAATTTGAATGTGATGATGATGGTACACAGATTATTCCAAATAATGATGTGCTAAACAGCTATTTCGAATGGATTCATAAAGACAGACTTCTTGATCAAAATCACACATTCGTGTGGAAATTTAACTTGGAGCCCCTAAGGACGAGTGGCATGAACCTTAGGCTCTGTGATGCT 3654 0.3842 MSGSSSSFAMCTSLTRYDVFLNFRGDDTRDNFISHLYAALQRKHVEGYIDYRLLRGEEISPALQTAIEESKIYVLVFSENYASSTWCLNELTKILDCKKKYGRDVIPVFYKVDPSTVRKQEKRYKEAFEEHELRFRENMNKVQGWKDALTEAAGLSGWDSNVTRPEYKLVEEIVEDILRKLNRYSISYDKKIIGIEKHIEGIQSLLHLESPDVRIIGICGMGGIGKTTISEQLYHTLAMQFDSHSLILDVQEKLQKEGIYNIINKYKSELLKETSSTHLSYYNGRLKRTKVLLILDDVTDSTQLNKLMGERDSFGQGSRIIMTSRDRQVLKNAGADDIYELKELNFHDSLKLFNLHAFXQNSSXEITXMDLSVKVLRYAXGVPLVLQILGSLLYGRQREAWESQLQNLEKCQDHNIFNVLKLSYDGLREEEKNIFLDIACFYRGHGEIVVAETLDDCGFSSKIGMDVLKDKCLISISDGRIVMHDLIQEIVRKECPEHPGKRSRLFKAEEIRDVLRKNKVHFIITQLNKGQMMLMIFPYCWGQIISNVVRESSLVSLPHTLKILCWNNFPQRSLPSNLCLQNLVRLEMPKCRLEQLWERDQYLPKLKRLNLSYSPKLTRIPDLSLSPNIKEIILSHCERLIQVHSSRFLSKLSCLLLDGCYGLKSVTIPSNILTRSPGLILLSDCHELEMFQTYETQPWPFTLLSSMWERDNPRYGRYIPFTRLDPSEIFSITFDRYEEEEKEVINNHIYLQCDEVLTKLREGVPLNFQSLKKFCFLDVSYCSSLSTFPCDLSETKFLKQLCLRGCSKLENFPEIEDTVEGLAVLILDXTAIQALPSSLWRLVGLEQLSLRGCKNLEIIPSSIGSLTRLCKLDLTSCQSLQTFPNTIFKLKLRILDXCGCLRLSTFPEITEQAQTFSHINLKETAIKELPSSFGNLVNLRSLQLNXCTDLESLPNSIVNLKRLCKLDCSGCAKLTEIPTHIGRLSSLMEMSLRKSGIVNLPESMAHLSSLKSLDLSDCKKLECIPPIPPFLKQLVALDCPSIRRVMPNSLVRNLSESKEGVFKFHFTNTQQLDSGARANIEEDARLRMTDDAYRSVFFCFPGTAVPHWFPFRGNGPSVSINEDLSFCSDDRLIGFALCVVFELLDTNDIEGRYGSFSYNLKFECDDDGTQIIPNNDVLNSYFEWIHKDRLLDQNHTFVWKFNLEPLRTSGMNLRLCDA 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0288 1218 SUPERFAMILY L domain-like 749 1041 - -
Vra1g0288 1218 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Vra1g0288 1218 Gene3D Ribonuclease Inhibitor 538 696 IPR032675 -
Vra1g0288 1218 Gene3D Ribonuclease Inhibitor 747 912 IPR032675 -
Vra1g0288 1218 SUPERFAMILY "Winged helix" DNA-binding domain 415 515 IPR036390 -
Vra1g0288 1218 Pfam TIR domain 17 186 IPR000157 GO:0007165
Vra1g0288 1218 Gene3D - 343 428 IPR042197 -
Vra1g0288 1218 Gene3D - 14 183 IPR035897 -
Vra1g0288 1218 SUPERFAMILY L domain-like 557 814 - -
Vra1g0288 1218 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 769 859 IPR044974 GO:0006952
Vra1g0288 1218 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 689 IPR044974 GO:0006952
Vra1g0288 1218 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 845 1141 IPR044974 GO:0006952
Vra1g0288 1218 Pfam NB-ARC domain 196 413 IPR002182 GO:0043531
Vra1g0288 1218 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 769 859 - -
Vra1g0288 1218 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 689 - -
Vra1g0288 1218 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 845 1141 - -
Vra1g0288 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 438 IPR027417 -
Vra1g0288 1218 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 158 IPR035897 -
Vra1g0288 1218 PRINTS Disease resistance protein signature 215 230 - -
Vra1g0288 1218 PRINTS Disease resistance protein signature 285 299 - -
Vra1g0288 1218 PRINTS Disease resistance protein signature 379 393 - -
Vra1g0288 1218 PRINTS Disease resistance protein signature 1005 1021 - -
Vra1g0288 1218 Pfam C-JID domain 1100 1184 IPR045344 -
Vra1g0288 1218 Gene3D Ribonuclease Inhibitor 913 1043 IPR032675 -
Vra1g0288 1218 SMART till_3 16 155 IPR000157 GO:0007165
Vra1g0288 1218 Gene3D - 184 338 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0288 Vra-Chr1 4316436 4321705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0288 772 942 WRKY Transcription Factor Family AT4G12020 37.427 1.90e-17 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0288 - - var:108318722 1801.56