Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0276 ATGTCTTCGCTGCAGTACGACCCGGCACCGGTCTCGCCGCCGTACAACACCCCACCAGCGCTAATCGCCTTCACGCTGGGTGTGCTGGTGGTGTGCTTCGTGGCGTTCAGTATAGTTTACCTGTGCAAATACTGTTTCTCGAGCGTGGTCCAAACCTGGGCCTTTCAACGCACCGCTTCGGGTTCCATCATTCGTCTGACCCCCCATAGATCTCCTCCTAGAGGCCTTGACCCTTCGTTGCTTGAGGTCTTCCCCACCTTCCCCTACTCCTCGGTGAAGGAGCTCCGGAAGGATCAGAAATACTGCTTGGAATGCGCCATCTGTTTGGTGGAGTTTGAGGATGACAGCAAGCTCCGCCTCTTGACCCTCTGCTGCCATGTTTTCCACCAGGACTGCATCGACCTCTGGCTCTGCTCTCACAAAACCTGTCCCGTTTGTCGTCGAGACCTTGACTCTCCCCCAGATGACCAACCTCTCAAACCTGGCGATGTTGTTGTTTCCTCAGTCAGCGGCGAGATACGCGTTGATGTAAGAGAAGAAGAAGGCTTTGATTGTGGTCGTGAACATGTTTGTGATAACAGTCAAGATCAACAACAGCATGAACAAACTGAACTTGAACGTAGTCATGGTCTAAGACAGGAACATGAGGTGGTTGATGCACATGAGGAACAAATGTTTGTACGGTCTCATTCCACCGGGCACTCCATAGTTATGATTAGAGGGGAGGGGGATGATGAAGGAAAGAATGACGATGACAAGTACACATTGAGATTGCCGGAGCATGTTTTGAGAGTGAACAATAAACATAATTCTACGAAGAGTTGTGCGAGTTTTAAGGATATGACAAAGCTTGATGTTCCTCTACCTTGTAGTAATTGTGGGTTTGTTCAACCCCCATCACCCAGTTGCTCCTCCTCTCCAACTCATACTCACTGA 936 0.5011 MSSLQYDPAPVSPPYNTPPALIAFTLGVLVVCFVAFSIVYLCKYCFSSVVQTWAFQRTASGSIIRLTPHRSPPRGLDPSLLEVFPTFPYSSVKELRKDQKYCLECAICLVEFEDDSKLRLLTLCCHVFHQDCIDLWLCSHKTCPVCRRDLDSPPDDQPLKPGDVVVSSVSGEIRVDVREEEGFDCGREHVCDNSQDQQQHEQTELERSHGLRQEHEVVDAHEEQMFVRSHSTGHSIVMIRGEGDDEGKNDDDKYTLRLPEHVLRVNNKHNSTKSCASFKDMTKLDVPLPCSNCGFVQPPSPSCSSSPTHTH* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0276 311 PANTHER RING FINGER DOMAIN-CONTAINING 8 283 - -
Vra1g0276 311 SUPERFAMILY RING/U-box 98 159 - -
Vra1g0276 311 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Vra1g0276 311 SMART ring_2 105 146 IPR001841 -
Vra1g0276 311 PANTHER RING-H2 FINGER PROTEIN ATL29 8 283 - -
Vra1g0276 311 CDD RING-H2_EL5_like 104 147 - -
Vra1g0276 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Vra1g0276 311 Pfam Ring finger domain 104 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0276 Vra-Chr1 3985482 3986897 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0276 19 264 Rapid Response to Elicitors AT2G35000 34.496 1.64e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0276 - - gmx:100815505 417.542