Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0273 ATGGCCGCTGTTGGCAACCCCAGAACGTGGATTCCATATATGAACAGCAAAGACTGTTCTCAAGGATTTTGCAGCTTGTACTGTCCACAGTGGTGTTACATAGTGTATCCACCTCCACCACCCTTTGAGTACCCTGATGATGATTCAAGCCCAAATTTCTCCCCTCTTGTCATTGCTATCATTGGTATTTTGGCCACTGCTTTTCTTCTGGTGAGTTACTACACTCTCATATCAAAGTACTGTGGCTCCAGAGAGTCTGCACGGAGAGACCCAAATGACGACTTGCAAGCCACTCACAATCCCCCTCTCCACGAACCATGGAACGCTTCAACCACTGGTCTTGACGAGGCTCTAATCAAATCAATTGCAGTTTTCAAGTATAAGAAAGGGGATGCGGGTTCTGTTGAAGTCACAAATTGTTCGGTTTGTCTCAGCGAATTTGAAGACGAAGAAAGTGTTAGACTTTTGCCAAAGTGCAGCCACGTTTTTCATGTCCATTGCATCGACCCTTGGCTCAAATCTCACTCCAGCTGCCCCTTGTGTCGTGCTGTCATATTCACTTGCAACGATTTTGTTCCTCGGACTCATTCCCCAGAAGAAGAAAGTGTCACTTCTTCAAGGAATGAAACTTCTTCTGAGAATGAAAGTGTTGGAGTGGTGGTGATGTTGGAAGAAGAAAGCATACACCATTCTAGGGCTTATCCAAAGCCTGCATTGCGAGCTTTCAGTGACTTGAGTAGCTTTCAGGGCAGGCACAGAGTGGTTGAGATAAGAGATGAAGTGTGTGAATCCGTTGGTAGGTCAGTGTCCATGGACCATTCGTTTCCAAGTGGTGTTTCTGTTGCTCATGTGTTGCAAATGCATGAAGAGGAAGATTCCCATGTGGAAGGGTGTTGTTCTTCTTCCGGTGAAGCTGGTCCATCAAAGATATCACGCGGAGAGAGGTACAAAACAAGGGTGTTGCATTGTGTTTTGAGTCCAATTGCAATGAAGAGATCGTTTTCCAGTGACAAATTCTCAGTTAGTAAAAGTAGCATAGCAAGACAGGGAACTATACCCATATGA 1065 0.4526 MAAVGNPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGILATAFLLVSYYTLISKYCGSRESARRDPNDDLQATHNPPLHEPWNASTTGLDEALIKSIAVFKYKKGDAGSVEVTNCSVCLSEFEDEESVRLLPKCSHVFHVHCIDPWLKSHSSCPLCRAVIFTCNDFVPRTHSPEEESVTSSRNETSSENESVGVVVMLEEESIHHSRAYPKPALRAFSDLSSFQGRHRVVEIRDEVCESVGRSVSMDHSFPSGVSVAHVLQMHEEEDSHVEGCCSSSGEAGPSKISRGERYKTRVLHCVLSPIAMKRSFSSDKFSVSKSSIARQGTIPI* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0273 354 SMART ring_2 140 181 IPR001841 -
Vra1g0273 354 SUPERFAMILY RING/U-box 139 190 - -
Vra1g0273 354 CDD RING-H2_PA-TM-RING 140 182 - -
Vra1g0273 354 MobiDBLite consensus disorder prediction 196 216 - -
Vra1g0273 354 Pfam Ring finger domain 139 182 IPR001841 -
Vra1g0273 354 MobiDBLite consensus disorder prediction 85 106 - -
Vra1g0273 354 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 345 IPR044675 -
Vra1g0273 354 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 345 - -
Vra1g0273 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 186 IPR013083 -
Vra1g0273 354 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0273 Vra-Chr1 3933103 3935136 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0273 1 227 C3H Transcription Factor Family AT3G03550 48.207 1.81e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0273 - - vun:114176645 611.298