Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0257 ATGGATGCAATGGAGAACTATTATTATAGCCAGAGAGACACAATGGCAGAGGAAGCGTTTGATTTGCCACCAGGGTTCAGGTTCCACCCCACGGATGAAGAACTGATCACTCATTACCTCTCACAGAAGGTTCTTGACAACTGCTTCTGCTCAAGGGCCATTGGAGAGGCTGATTTGAACAAGTGCGAGCCATGGGATTTGCCTTGTATGGCAAAAATGGGTGAAAAGGAGTGGTATTTTTTCTCCGTGAGGGACAGAAAATACCCAACTGGGCAAAGGACTAATAGAGCCACCGGTGCTGGTTACTGGAAGGCCACCGGCAAAGACAAAGAGATATACAAGGCAAGGACACTCATTGGGATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCCAGTGGTGAAAAAACCAACTGGGTCATGCATGAATACAGATTAGAAGACCACCATTCTATGCACAATCCACACAAAAAGGCCATGAATGATTGGGCCATCTGCAGGATTTTTGAGAAGACCAACTGCGGGAAGAAAATGCAGATTTCTGGTTTGGTAAGGTTGAGTTCCTTTGGGAAGGAGATGCCTTCGCTGATGGATTCTTCTCCATACAACACGACTGAAGCAAAACCTGTTTTGGGGGAATCGTCACAGTTCTCATCAGATCGAAACCAGAGTGATGAAAACATAGCTGAGAGCTTAGAAACTCTGATGATGGCATCTTCATCTTCATATTCTTCAAACCCCTTTGATGTTTCCCCTGCTTCTTGGAGTGTGCCCCACCAATCCCTCCAAGCAGGGAACTCAAACTATTCCATGGATGAAGAACAACAGTCCATGTTGGGGATGGTGATTGAAAACCATGGATCAAGCACAACCCTAAGAACTCATAAAGCACTGAATAATGACTTTGATGCTGACACTTCCTCTTTCATCTACAATGATGAAATCTTTCACAGATCATTCGGGAACCAGGAATATTCATCACCTTCTCTGTGGGGATTCTAA 1005 0.4468 MDAMENYYYSQRDTMAEEAFDLPPGFRFHPTDEELITHYLSQKVLDNCFCSRAIGEADLNKCEPWDLPCMAKMGEKEWYFFSVRDRKYPTGQRTNRATGAGYWKATGKDKEIYKARTLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLEDHHSMHNPHKKAMNDWAICRIFEKTNCGKKMQISGLVRLSSFGKEMPSLMDSSPYNTTEAKPVLGESSQFSSDRNQSDENIAESLETLMMASSSSYSSNPFDVSPASWSVPHQSLQAGNSNYSMDEEQQSMLGMVIENHGSSTTLRTHKALNNDFDADTSSFIYNDEIFHRSFGNQEYSSPSLWGF* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0257 334 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 299 - -
Vra1g0257 334 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Vra1g0257 334 PANTHER NAC DOMAIN-CONTAINING PROTEIN 92-LIKE 16 299 - -
Vra1g0257 334 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Vra1g0257 334 SUPERFAMILY NAC domain 15 172 IPR036093 GO:0003677|GO:0006355
Vra1g0257 334 MobiDBLite consensus disorder prediction 198 225 - -
Vra1g0257 334 Pfam No apical meristem (NAM) protein 23 147 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0257 Vra-Chr1 3359007 3360747 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0257 21 330 NAC Transcription Factor Family AT5G07680 52.201 2.68e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra1g0257 NAM 3.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0257 - - vun:114181690 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0257 1 3359007 3360747 Vra1g0257 1 3359007 3360747 ECH
Vra4g1039 4 17607778 17610314 Vra1g0257 1 3359007 3360747 ECH