Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0256 ATGGGACGATCACCATGCTGCGACAAGGTAGGTTTAAAGAAAGGACCATGGACTCCGGAAGAAGATCAGAAGCTCTTGGCTTACATTGAAGAACATGGTCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGGCTTCAGAGGTGTGGCAAGAGCTGTAGACTGAGATGGACCAATTATCTCAGACCTGATATTAAGAGAGGAAAGTTCAGTCTGCAAGAGGAACAAACCATCATTCAACTCCATGCCCTCTTAGGAAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGATAACGAGATCAAGAACTACTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGACCCTGTCACACACAAACCCAAAAACGATGCACTTCTCTCCAGTGATGGTCAATCAAAAACCGCTGCAAACCTCAGCCACATGGCCCAGTGGGAAAGTGCTCGACTTGAAGCTGAAGCAAGACTAGTGAGAGAGTCAAAGCTACGTTCACATTCACTTCAGCAACAAATTGGAAGTTCTTCTACATTTGCATCATCATCTTCTGCATCCACTTCAGCTTCAGTTCTCAACAATAATAAACCAGAAGCACCACCTCCGCCACCCCCGCCGCCCTCGCGGTCCTCCCTTGACGTCCTCAAGGCTTGGAACAACGGAGGTTGGTTGAAGTCCAGTGAAGGGAGTGGCGCCATTGCAAGCACGGTTGGGGTAAGTGGAGACCTTGAGTCTCCTACTTCTACGTTATCTTTCTCTGAGAATGCACCACCGATTATGAATTCGATCGGAGGAGAAAATAACAACAACAATGATAACGCAATGCCTATGATCGAGTTTGTGGGAAGTTCGGGTAATTCTTCTTCTCTTGTGAAAGAAGAGGGTGAGCAAGAATGGAAAGGTTATGATAGTTCTATCAACACTTTCAGTTCTGGTTTGCATGAGTTCACAATGGCCATGGAGGGAACTTGGGTGCACGAGACTCTCAGAACAAATGGCTCACATGATGACATTGTTGAAGAAGGCTTCACCAATCTTCTCCTTAAGACAAACTCGGAAGATCCAAGTTTGTCGTCGGAAGGTGGAGGAGAGTCTAACAATGGTGACGGTGGTAGCGCCGGTCACAGTGATTTTTACGAAGATAACAACAACTATTGGAACAGCATCCTTAATTTAGTGAATTCATCTCCTTCTCATTCTCCTATGTTCTGA 1227 0.4605 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHSLQQQIGSSSTFASSSSASTSASVLNNNKPEAPPPPPPPPSRSSLDVLKAWNNGGWLKSSEGSGAIASTVGVSGDLESPTSTLSFSENAPPIMNSIGGENNNNNDNAMPMIEFVGSSGNSSSLVKEEGEQEWKGYDSSINTFSSGLHEFTMAMEGTWVHETLRTNGSHDDIVEEGFTNLLLKTNSEDPSLSSEGGGESNNGDGGSAGHSDFYEDNNNYWNSILNLVNSSPSHSPMF* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0256 408 MobiDBLite consensus disorder prediction 172 200 - -
Vra1g0256 408 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra1g0256 408 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vra1g0256 408 PANTHER TRANSCRIPTION FACTOR MYB106 1 401 - -
Vra1g0256 408 CDD SANT 69 112 IPR001005 -
Vra1g0256 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra1g0256 408 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra1g0256 408 CDD SANT 16 61 IPR001005 -
Vra1g0256 408 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra1g0256 408 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 401 - -
Vra1g0256 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra1g0256 408 SMART sant 66 114 IPR001005 -
Vra1g0256 408 SMART sant 13 63 IPR001005 -
Vra1g0256 408 MobiDBLite consensus disorder prediction 120 147 - -
Vra1g0256 408 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra1g0256 408 MobiDBLite consensus disorder prediction 132 147 - -
Vra1g0256 408 MobiDBLite consensus disorder prediction 172 219 - -
Vra1g0256 408 Gene3D - 13 66 - -
Vra1g0256 408 MobiDBLite consensus disorder prediction 201 215 - -
Vra1g0256 408 MobiDBLite consensus disorder prediction 356 382 - -
Vra1g0256 408 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0256 Vra-Chr1 3323479 3326199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0256 1 408 MYB Transcription Factor Family AT3G01140 54.722 1.32e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g0256 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0256 K09422 - gmx:100787446 697.582