Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0252 ATGGAGGAGAGGAATGAGATGGAAAAGATTGATGATGTTATGCCAGGATTTCGTTTTCACCCCACTGATGAAGAGCTTGTTGGTTTCTATCTCAAGAGAAAAATTCAGCAGAAGTCTCTCCCTATTGAACTGATTAAGCAAGTGGATATTTACAAACATGATCCATGGGACCTTCCAAAAGAGCTAGCAGGCACAGGGGAGAAAGAGTGGTACTTCTATTGCCCAAGGGACAGAAAATACAGGAACAGTGCACGTCCAAATAGGGTCACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGACAGACCTATATATTCCTCTGAAGGGAAGTGCATTGGTCTGAAGAAGTCTCTTGTGTTCTACAGAGGAAGAGCTGCCAAAGGGATGAAAACTGATTGGATGATGCATGAGTTTAGGCTTCCTTGCATGTCTGACTCAGCCCCTACTAAAAAACTCTCAGACAAAACTCTCCCTCCAAGTGATTCATGGGCAATTTGTAGGATATTCAAGAAAACCAACTCCCTTTCCATGGCACAGAAAGCTTTATCTCACCCTTGGATCTCTCAGTTATCAGGAAGCATGGTATCTGACATGTTCACACAGGGTGCAGAAACAAACCATCACCTAGGATCACCAGCCATTCAATTTTGTTATGAAAAGCAAGAGTTAAACCAAGTCTCCAATAGTGACATCAACACCAACTTCACAGCTTCAGATATTCCCAGTTACAAACCCATCAACAGCAGCACAGTTCCCAAGCCTTCACCACAAATTCCAGTTTCAGATGACTTCATATTCTACACAGAACACACCAAGTGCACACTTGATGCCACTTCCATGCTTTCTCCCAACCCTGACTACATAACATTTGAAGAGCCAAACCAACAACAGTATAGTGGCTTCTCAACCAATCTACCTCACTTCATCCAACAAAACATGACCACAGAAACAGTAACAAAAGAACAAGAAGATTGGGAAACAATTGGGAGAACCACTGGATTTCCCTTTACTTTGCTTCCCCCATATGATGCATGGAAGCCTTCTTCTGTGGCATGGGATTCACCTTCTTGCCCCAGTGACATGTCCACTACCTATTCCACCAGTAAATGCTACACTTGA 1119 0.4343 MEERNEMEKIDDVMPGFRFHPTDEELVGFYLKRKIQQKSLPIELIKQVDIYKHDPWDLPKELAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCMSDSAPTKKLSDKTLPPSDSWAICRIFKKTNSLSMAQKALSHPWISQLSGSMVSDMFTQGAETNHHLGSPAIQFCYEKQELNQVSNSDINTNFTASDIPSYKPINSSTVPKPSPQIPVSDDFIFYTEHTKCTLDATSMLSPNPDYITFEEPNQQQYSGFSTNLPHFIQQNMTTETVTKEQEDWETIGRTTGFPFTLLPPYDAWKPSSVAWDSPSCPSDMSTTYSTSKCYT* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0252 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 370 - -
Vra1g0252 372 Pfam No apical meristem (NAM) protein 15 140 IPR003441 GO:0003677|GO:0006355
Vra1g0252 372 Gene3D NAC domain 22 176 IPR036093 GO:0003677|GO:0006355
Vra1g0252 372 SUPERFAMILY NAC domain 11 171 IPR036093 GO:0003677|GO:0006355
Vra1g0252 372 ProSiteProfiles NAC domain profile. 13 171 IPR003441 GO:0003677|GO:0006355
Vra1g0252 372 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 1 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0252 Vra-Chr1 3247136 3249805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0252 2 187 NAC Transcription Factor Family AT5G39820 67.662 1.93e-94 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra1g0252 NAM 4.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0252 - - gmx:100777630 615.92