Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0245 ATGGCTGCAATATCATGTTCCTATGCCTTCTCCCATGATGTGTTCCTCAGCTTTAGAGGCTCAGACACACGCCATGGTTTTGTTGGGAATCTTTACAAAGCTCTTGATGACAAGGGAATCCACACTTTCATTGATGATGAGAAGCTTCAGAGAGAAGAGGAAATAACACCTGCACTTATGAAGGCAATTGAAGAGTCTAGGATTGCCATCACTGTGCTCTCTCACAACTATGCTTCTTCATCATTTTGTTTAGATGAACTTGTTCATATCATTGCTTGTGCTAAGAAGAAAGGCTTGTTGGTTTTGCCTGTTTTTTATGACTTAAATCCTTCTGATGTAAGACACCAGAAAGGTAGTTATGCAGAAGCATTGACAAGGCATGAGGAAAGGTTCAAAGACAAGAAGGAAAGTTTCAGCCATAACATGGAGAGGTTGGAGAAATGGAAGATGGCTTTGCTTCATGTGGCTAACTTGTCTGGCTATCATTTCAAACAAGGATATGAATATGAATATGAGTTTATCAGAAGGATTGTTGAGTTGGTCTCTAGCAAGATTAATCGAACTCCTTTACATGTTGCGGATTACCCGGTTGGATTAGAGGCACAAATGGTAGAAGTGATGAAGCTTTTGGATGTTGGAATTGATGATGGTGTTCACATGGTTGGGATCCATGGAATTGGTGGAATAGGAAAAACAACACTTGCTCTTGCAATTTATAATTTGGTTTTTGACCATTTTGATGGTCTGTGTTTTCTTGAAAACGTGAGAGAAAACTCAGACAAACATGGATTACAACATCTCCAAAGCATTCTTCTTGCAGAGTTGGTTAAAGAAAAGAGAATAAACATAGCAAGTGTACAAGAAGGAATTTCAATGATACAACATAGGCTGCAACGAAAGAAGGTTTTCTTGATAGTAGATGATGTTGACAAGCATGAGCAGTTGCAGGCTATTGTTGGAAGATCTGACTGGTTTGGTTCAGGCAGCAGAATCATCATAACGACTCGAGATGAACAGCTGCTAGCATCTCATGAGATTAAAAGAATGTATGAGGTGAAGGAATTGAACAAGAAGGATGCTCTTCAATTGCTTACATGGAAAGCTTTTAGAACTGATGAAGCTGATCCAAGTTATGAGGAGGTCTTGAAACGTGTGGTAGCTTATGCTTCTGGTCTTCCATTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTATAGAAGAATGGAAATCTGCTATCAAACAATATGAAAGAATTCCTAATAACCAAATCCTGAAGATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAGAAGAATGTTTTTCTTGACATTGCTTGCTGCTTCAAGGGATATGAATTGGAAGAGGTCCAAGATATACTTCATGCACATTACGGTGATTGCATGAAATATCATATTGGGGTGCTGGTTGATAAATCTCTCTTAAAGTTTAGTATGCATGGTATGATGGTGACAATGCATGACTTGGTAGAGGACATGGGTAAGGAAATTGTACGAAAGGAGTCACCAAAAGATCCAGGCAAACGTAGCAGATTATGGTTGCATGAGGATATAATACAGGTTTTAGAAGACAACACAGGAACTAGTGAAATTGAAATCATACATTTGGATTTTGCCCTACTTGACAAAGAAGAAATGGTAGAATGGAACAGAAAGGCCTTCAAGAAGATGAGAAACCTCAAAACACTAATTATTAAAAGTGGTAACTTTTCTGCAGGTCCCAAATATCTTCCAAATAGTCTAAGAGTATTAGAATGGTGGAGATATCCTTCACATGATTTACCATCCGATTTTCATTCAAAGAAACTTGCCATGTGCAAATTACCTCAGAGTTGCTTTACATCACATGAGCTGGTTAGCTTATTGAAGAAGTTCATGGGTATGAGATTTTTAAATTTGGACAAAAGCAAATCCTTAACACAGATACCTGATGTATCTGGTCTCCCAAATTTAGAGAAACTTTCATTTCAGCATTGTCAGAATTTAACTGCAATTCACAATTCCATTGGCTTTCTATGTAAACTCAAAATATTGAGTGCTTTTGGCTGCACCAAACTTGTGAGTTTTCCACCTATCAAGTTGACTGCTCTTGAAAAGCTCAATCTCTCACGTTGTTACAGTCTTGAAAACTTTCCAGAAATTTTAGGAAAGATGGAAAACATAAGGGAACTTCAGTTGGAGTACACAGCCATAAAAGAATTTCCAAATTCTTTTCAAAATCTTACACGGCTTCAAGAGTTACAACTATCAAACTGTGGAGTTGTTCAATTACCAAGTAGCATTGCTGTGATGCCAGAACTGACTGATCTTATTGGTTGGAAATGGAAAGGGTGGCAATGGCTGAAACAGGAAGAGGATAAAGAAAAAGAGGGATCATCTATAGTATCTTCAAATGTAGAATATCTTTGGGCCTCAGAATGCAACCTGTGTGATGATTTCTTTTCAATCGGTTTCATGAGATTTGCTCATGTCAAAGACTTAGACTTATCAAAGAACAATTTCACAATGCTACCTGAATGCATCAAAGAGTTTCAATTTTTAAGGAAGCTTAATGTGAACGATTGCAAGCTTCTTCAGGAAATTAGAGGGATTCCACCAAGCTTGAAACATTTCTTAGCAACAAATTGTAAATCCTTGACTCCCTCAAGCACAAGGATGTTCCTAAATCAGGAACTACATGAGGCTGGAAAAACTCAGTTTTATTTACCAGGAGAAAGGGTTCCAGAATGGTTTGATCACCAAAGTAATGGACCTTCAATTTCTTTCTGGTTTCGTAATAGGTTTCCTGAGAAGGTTCTTTGTCTTGTTATTGGACCTGTGAATGACTCTGGAATGTTTAGGCCTATGGTAGTCATCAATGGCAATAAGAATTTTCTTGGTAGTGGCTATTTCATGATGGGAATGGATCATACATATATTTTTTATCTTCTAACGGTAGAGTTTGAAGATAACTTATATGGAGTTCCTTTAGACAATGAATGGAACCATGCTGAAGTTAAATACGTAGGTTTGGAAGAGATTTCAATCCTTAAAGAAAGTGGAATTCATGTTTTCAAACAAGGTGGCATGGAGGATATTTGGTTTTCTGATCCTTATGGCAAGAGAAAATTAGAAGACGATCTCAATAGTTTTGAATCACAAAACCAACAACTGCTTAAAAAGCATAGGTTTGTGGACATGGAAGCTTTGTAG 3222 0.3752 MAAISCSYAFSHDVFLSFRGSDTRHGFVGNLYKALDDKGIHTFIDDEKLQREEEITPALMKAIEESRIAITVLSHNYASSSFCLDELVHIIACAKKKGLLVLPVFYDLNPSDVRHQKGSYAEALTRHEERFKDKKESFSHNMERLEKWKMALLHVANLSGYHFKQGYEYEYEFIRRIVELVSSKINRTPLHVADYPVGLEAQMVEVMKLLDVGIDDGVHMVGIHGIGGIGKTTLALAIYNLVFDHFDGLCFLENVRENSDKHGLQHLQSILLAELVKEKRINIASVQEGISMIQHRLQRKKVFLIVDDVDKHEQLQAIVGRSDWFGSGSRIIITTRDEQLLASHEIKRMYEVKELNKKDALQLLTWKAFRTDEADPSYEEVLKRVVAYASGLPLALEVIGSNLFGKSIEEWKSAIKQYERIPNNQILKILKVSFDALEEEEKNVFLDIACCFKGYELEEVQDILHAHYGDCMKYHIGVLVDKSLLKFSMHGMMVTMHDLVEDMGKEIVRKESPKDPGKRSRLWLHEDIIQVLEDNTGTSEIEIIHLDFALLDKEEMVEWNRKAFKKMRNLKTLIIKSGNFSAGPKYLPNSLRVLEWWRYPSHDLPSDFHSKKLAMCKLPQSCFTSHELVSLLKKFMGMRFLNLDKSKSLTQIPDVSGLPNLEKLSFQHCQNLTAIHNSIGFLCKLKILSAFGCTKLVSFPPIKLTALEKLNLSRCYSLENFPEILGKMENIRELQLEYTAIKEFPNSFQNLTRLQELQLSNCGVVQLPSSIAVMPELTDLIGWKWKGWQWLKQEEDKEKEGSSIVSSNVEYLWASECNLCDDFFSIGFMRFAHVKDLDLSKNNFTMLPECIKEFQFLRKLNVNDCKLLQEIRGIPPSLKHFLATNCKSLTPSSTRMFLNQELHEAGKTQFYLPGERVPEWFDHQSNGPSISFWFRNRFPEKVLCLVIGPVNDSGMFRPMVVINGNKNFLGSGYFMMGMDHTYIFYLLTVEFEDNLYGVPLDNEWNHAEVKYVGLEEISILKESGIHVFKQGGMEDIWFSDPYGKRKLEDDLNSFESQNQQLLKKHRFVDMEAL* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0245 1073 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 924 IPR044974 GO:0006952
Vra1g0245 1073 ProSiteProfiles TIR domain profile. 10 185 IPR000157 GO:0007165
Vra1g0245 1073 Gene3D Ribonuclease Inhibitor 800 906 IPR032675 -
Vra1g0245 1073 Gene3D Ribonuclease Inhibitor 525 787 IPR032675 -
Vra1g0245 1073 Pfam NB-ARC domain 201 424 IPR002182 GO:0043531
Vra1g0245 1073 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 924 - -
Vra1g0245 1073 Pfam TIR domain 12 188 IPR000157 GO:0007165
Vra1g0245 1073 Pfam Leucine rich repeat 706 762 IPR001611 GO:0005515
Vra1g0245 1073 Gene3D - 11 183 IPR035897 -
Vra1g0245 1073 SUPERFAMILY L domain-like 550 891 - -
Vra1g0245 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 448 IPR027417 -
Vra1g0245 1073 Gene3D - 184 349 IPR027417 -
Vra1g0245 1073 SUPERFAMILY "Winged helix" DNA-binding domain 425 533 IPR036390 -
Vra1g0245 1073 SMART till_3 11 158 IPR000157 GO:0007165
Vra1g0245 1073 Gene3D - 354 438 IPR042197 -
Vra1g0245 1073 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Vra1g0245 1073 PRINTS Disease resistance protein signature 220 235 - -
Vra1g0245 1073 PRINTS Disease resistance protein signature 296 310 - -
Vra1g0245 1073 PRINTS Disease resistance protein signature 389 403 - -
Vra1g0245 1073 PRINTS Disease resistance protein signature 702 718 - -
Vra1g0245 1073 Coils Coil 1044 1064 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0245 Vra-Chr1 3166197 3170332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0245 7 780 WRKY Transcription Factor Family AT4G12020 31.553 2.10e-82 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0245 - - gmx:100780257 1788.85