Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0243 ATGGAGATAATAACACCAACGCCACCACCAACAGCCGTCACTACCACAAACGCCGCCCCCAAATCGCCCGAACTCGACATAGAGACTCCCACCCGGATCCATCAAGCCGCCGGAAACTCCAATCCCAGTCCAAAGCCGGTGTCTTTCTCCAACGGGGTCTTGAAGCGCCACCATGCAAACAACCGCACCGCCGCCCCGGTTGTTTACAAGGAATGCTTGAAGAACCACGTGGCCAGCTTAGGCGGCCACGCTCTCGACGGCTGCGGCGAGTTCATGCCATCGCCCGCGGCAACGGCCGACGACCCCAGCTCCATCAAATGCGCCGCCTGCGGCTGCCACCGTAACTTCCACCGCCGCGAGCCAGAGGAGCCGCCAATTTCTCCGGCGACGCATCACGTTCTGGAGTACCAGCCCCACCACCGCCACCACCCTCCTCCACCGCCGCACCGGAGTCCGAATTCCTCCTCTCCTCCGCCGATCTCCTCCTACCCCTCCGCACCCCACATGCTCCTCGCTCTCTCCAGTGGTGGCGGCCTTTCCGTGGCTCCGGAGAACACCGCCGCGCCGGCTCCGGCGCACCACTCCCGGAAGCGCTTCCGCACGAAATTCACCCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCCGACAAAGTGGGGTGGAAGATGCAGAAGCGCGACGAAAACATGGTTATGGAGTTTTGCAACGAGGTTGGTGTGGACAGAGGAGTCCTCAAAGTGTGGATGCACAACAACAAGAACACTTTTGCCAAAAAGGACAACCTCAATGGTAGCCCTGCTAACGGGATTAACCATGTCGCCTCTCCAAACAAAGCTACCGTCAGAAGCAACAACGTTAATGGCCTCGAACAGGAACACGGCGGCGGAATCAACGGTAACAGTGACCACGACCACGACCACAACCACAACCTCGGTTCTTCTTCTCATGATGTGAACGAGTACGATAATGACAGTGGAACAAACGGTGGTGGAACAAACGGGTCTTCTTCTTCTTAA 1014 0.5838 MEIITPTPPPTAVTTTNAAPKSPELDIETPTRIHQAAGNSNPSPKPVSFSNGVLKRHHANNRTAAPVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPEEPPISPATHHVLEYQPHHRHHPPPPPHRSPNSSSPPPISSYPSAPHMLLALSSGGGLSVAPENTAAPAPAHHSRKRFRTKFTQEQKEKMHEFADKVGWKMQKRDENMVMEFCNEVGVDRGVLKVWMHNNKNTFAKKDNLNGSPANGINHVASPNKATVRSNNVNGLEQEHGGGINGNSDHDHDHNHNLGSSSHDVNEYDNDSGTNGGGTNGSSSS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0243 337 MobiDBLite consensus disorder prediction 286 337 - -
Vra1g0243 337 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 4 274 - -
Vra1g0243 337 MobiDBLite consensus disorder prediction 137 198 - -
Vra1g0243 337 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Vra1g0243 337 MobiDBLite consensus disorder prediction 148 164 - -
Vra1g0243 337 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
Vra1g0243 337 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 196 253 IPR006455 -
Vra1g0243 337 MobiDBLite consensus disorder prediction 8 22 - -
Vra1g0243 337 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 274 - -
Vra1g0243 337 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
Vra1g0243 337 MobiDBLite consensus disorder prediction 1 26 - -
Vra1g0243 337 Gene3D - 182 257 - -
Vra1g0243 337 MobiDBLite consensus disorder prediction 313 337 - -
Vra1g0243 337 MobiDBLite consensus disorder prediction 296 312 - -
Vra1g0243 337 SUPERFAMILY Homeodomain-like 186 257 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0243 Vra-Chr1 3132307 3133776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0243 13 255 ZF-HD Transcription Factor Family AT3G28920 56.202 8.22e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra1g0243 ZF-HD_dimer 7.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0243 - - gmx:100814730 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0243 1 3132307 3133776 Vra4g1012 4 17293590 17295047 PCT