Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0242 ATGAGGAAGCGGCAAGTGGTTGTGAGAAGAGAGGAGCCTCAGAGAAGTGTTAGGAGTGTGAAGTATGGTGAGTGCCAGAAGAATCATGCAGCAAATGTTGGAGGGTATGCTGTTGATGGTTGCAGAGAATTCATGGCAAGTGGTGGAGAAGGGACAACTGCTGCTCTCACTTGTGCTGCATGTGGCTGCCACAGGAACTTCCACAAGAGACAGGTGGAAACTGAAGTAGTGTGTGAGTGCTCCTCACCTCCCTCCATTGGCACATGA 267 0.5056 MRKRQVVVRREEPQRSVRSVKYGECQKNHAANVGGYAVDGCREFMASGGEGTTAALTCAACGCHRNFHKRQVETEVVCECSSPPSIGT* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0242 88 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
Vra1g0242 88 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 21 71 IPR006456 -
Vra1g0242 88 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 83 - -
Vra1g0242 88 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
Vra1g0242 88 PANTHER BNAA09G44460D PROTEIN 16 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0242 Vra-Chr1 3097639 3099010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0242 1 87 Zinc finger-homeobox gene family AT3G28917 69.697 8.29e-43 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra1g0242 ZF-HD_dimer 5.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0242 - - aprc:113868039 153.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0242 1 3097639 3099010 Vra1g0242 1 3097639 3099010 ECH