Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0241 ATGGGAAGGCCACCTTGTTGTGATAAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATTTTGGTGTCTTACATACAGGACCATGGTCCTGGCAATTGGAAAGCTGTTCCTACCAATACTGGGTTGTCAAGGTGCAGCAAGAGTTGTAGACTTAGATGGACTAATTATCTGAGGCCAGGAATCAAAAGGGGTAACTTCACTGAACAAGAGGAGAAGATGATAATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCCATAGCTGCATATCTTCCACAAAGAACAGATAATGACATAAAAAACTACTGGAACACCTATCTGAAGAAAAAGCTGAACAAATTGGAAGCAAGTGGTTCTGAAGGAAGTTTGGGGCATGTTGGGGTTTCAGTTTCTCAGTCAATGTCTAGAGGGCAGTGGGAAAGAAGGCTACAAACGGATATTCACATGGCAAAGAAAGCTCTCAGTGAAGCTCTTTCACCAAAGAAGACATCATCTACCTTTTTAGCTGAGTTAAATTCAAACCGTTCCAATGATAATAGCACTGGCTCCTTCTACAACTCCACAAAACCAACACCGTCTATAAGCTATGCCTCAAGTGCTGACAACATAGCTCGTTTGTTGAAGGGCTGGATGAAAAGCACACCAAAACGTGCTGCTACTCAAAACTCCATCATCAACTTGGCTTGTGCAGGAGCTGACACTGCTTCCAGTGAAGGAACTACAAAGGGAAGCTCAACCAGTGTGGAGTTGTCTGAGACTTTTGAGTCCTTGTTTGGCTATGAGTCTTTAGAGTCTTCAAATTCTGAGTTTTCACCTTCTCTTTCTCCTGAGGGCACTCTCTTCCAAGATGAGAGCAAGCCTGATATTACTGGAATAGACGTGCCTTTCTCTTTGCTTGAGAAATGGCTTCTGGATGATTCTGGTTGTCAAGAGAAACTTAGTTTCTAG 960 0.4313 MGRPPCCDKGVKKGPWTPEEDIILVSYIQDHGPGNWKAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKLEASGSEGSLGHVGVSVSQSMSRGQWERRLQTDIHMAKKALSEALSPKKTSSTFLAELNSNRSNDNSTGSFYNSTKPTPSISYASSADNIARLLKGWMKSTPKRAATQNSIINLACAGADTASSEGTTKGSSTSVELSETFESLFGYESLESSNSEFSPSLSPEGTLFQDESKPDITGIDVPFSLLEKWLLDDSGCQEKLSF* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0241 319 SMART sant 12 62 IPR001005 -
Vra1g0241 319 SMART sant 65 113 IPR001005 -
Vra1g0241 319 Gene3D - 67 126 - -
Vra1g0241 319 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vra1g0241 319 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vra1g0241 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 317 - -
Vra1g0241 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Vra1g0241 319 CDD SANT 68 111 IPR001005 -
Vra1g0241 319 MobiDBLite consensus disorder prediction 271 290 - -
Vra1g0241 319 CDD SANT 15 60 IPR001005 -
Vra1g0241 319 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vra1g0241 319 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Vra1g0241 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Vra1g0241 319 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vra1g0241 319 Gene3D - 12 65 - -
Vra1g0241 319 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0241 Vra-Chr1 3063649 3065367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0241 1 310 MYB Transcription Factor Family AT5G62470 52.571 1.58e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g0241 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0241 K09422 - gmx:780542 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0241 1 3063649 3065367 Vra4g1010 4 17259439 17260986 PCT