Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0238 ATTGCAACTTGTTCCAATCTTCGGAGATTCAGTTTTCTCGATATTCAGATTGCAACACAGAATTTTGGTTGCAGGAATTTTCTTGGTAGGGGAGGTTTTGGAACTGTGTTCAAAGGTTGGGTTGATGAAAGAGGGGATTCTGCAGCACCACCTGGAACAATGATTCCAGTAGCAGTGAAGACTCTAAACCCTAATGGATTTCAAGGTCATAAGCAATGGCTTGCTGAAATTAAATATCTGGGTGAACTCTATCATCCTAATCTGGTGAGATTGGTGGGTTATTGCATGGAGGAAGATAAAAGGGTACTCGTATACGAATACATGAATCGAGGAAGCTTAGAGAAGTATCTGTTCCAAAGAGGAAGTGTGCGACTTCCATGGCATATCAGGATTAAAATTGCAATTGATGCTGCCAATGGTTTGACATTTTTGCACGAGGAAGCTGCACGGGCTGTGATATTTCGAGATTTCAAGACATCCAATATCCTTTTGGATCAGGAATTCAATGCAAAACTTTCAGACTTTGGGTTTGCAAAAGATGCTCCAGTGGGAGATAAAAATCACGTGTCTACGGAGATTATGGGAACAGAAGGTTACATAGCCCCTGAGTATGTGTTGACAGGACACCTTACATCGAAGAGTGACGTCTATAGCTTTGGGATGGTTCTCCTTGAAATGTTGACAGGAAAAAGAGCTGTGGATCAAATGAGGCCTGCAAAAGAGAAAAACTTGGTGGACTGGTTGCGTCCTAGAATAAGGAGAAGAGAGAATTTTCATTACGTGATGGACCCTAAATTTGAAGGGCAGTATCCAATCAGAGATGCATATAGGGCAATGAAGTTGGCCGTTCAGTGTCTTCGGCATGATCCAAGTGGAAGACCACTGATGAGTGAAGTGGTTGGTGAGTTGAAGAATTTGCTGGCTCGTGATGATGGCGTGTATTCTGCTCCCTCAATTTCACCATCACCTGTACCATCTCCTTCACCTTCAATCCCAGCAACCTCACTTGGGAGAATCCATGTCGGTCCTTCCAACCATGCTGCCGGTGCTGCTAACAAGTATGGCCTTAGAACTGCTTCAGAACCGAACGTTCCACGGCGTTTTCAGGCCTCACCGGTCGTCCAAGACAGCCCTCTCACTCCACCTTCATCCTAA 1155 0.445 IATCSNLRRFSFLDIQIATQNFGCRNFLGRGGFGTVFKGWVDERGDSAAPPGTMIPVAVKTLNPNGFQGHKQWLAEIKYLGELYHPNLVRLVGYCMEEDKRVLVYEYMNRGSLEKYLFQRGSVRLPWHIRIKIAIDAANGLTFLHEEAARAVIFRDFKTSNILLDQEFNAKLSDFGFAKDAPVGDKNHVSTEIMGTEGYIAPEYVLTGHLTSKSDVYSFGMVLLEMLTGKRAVDQMRPAKEKNLVDWLRPRIRRRENFHYVMDPKFEGQYPIRDAYRAMKLAVQCLRHDPSGRPLMSEVVGELKNLLARDDGVYSAPSISPSPVPSPSPSIPATSLGRIHVGPSNHAAGAANKYGLRTASEPNVPRRFQASPVVQDSPLTPPSS* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0238 384 PANTHER TYROSINE KINASE FAMILY PROTEIN 4 343 - -
Vra1g0238 384 ProSiteProfiles Protein kinase domain profile. 22 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0238 384 ProSitePatterns Protein kinases ATP-binding region signature. 28 60 IPR017441 GO:0005524
Vra1g0238 384 Pfam Protein tyrosine and serine/threonine kinase 27 302 IPR001245 GO:0004672|GO:0006468
Vra1g0238 384 SUPERFAMILY Protein kinase-like (PK-like) 6 321 IPR011009 -
Vra1g0238 384 Gene3D Phosphorylase Kinase; domain 1 1 107 - -
Vra1g0238 384 PANTHER OS01G0588500 PROTEIN-RELATED 4 343 - -
Vra1g0238 384 MobiDBLite consensus disorder prediction 358 384 - -
Vra1g0238 384 CDD STKc_IRAK 28 306 - -
Vra1g0238 384 Gene3D Transferase(Phosphotransferase) domain 1 108 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0238 Vra-Chr1 3009997 3012158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0238 10 331 Glycoside Hydrolase AT3G07070 49.074 1.49e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra1g0238 PK_Tyr_Ser-Thr 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0238 - - vra:106755672 758.059