Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0237 ATGCTAAGATCAATCCACACAAGGGGTCTAACTGAAAATATGGAAAGCATTGATTGTATTAGGGCTGATTCTTCAATTGGGGCCAAAACCAAGGGAAGAAGAAACAACAAAGATGTTGTTCGAGGTAGTACTAAAGAAGGTTCAAGATTTTGGAAGAAATTGAGGATTTTCCTAGGTTGCATGCTTTGGAGTTCCAAAGGGGAAGCTTCTTCAAACAAAATCCACCAAATTCATGGAAGACATGTTACAAATGATGTTGATAGACAGCAACCAATTTCCCCAACATCCTCATCCAACAGAAGAACAAGTAGCCATGCAAGATTGTCTGTTCCGGATCAAGAACTGTTTGAAGCTTCTTTGCTTCTTCGAAGGTTCGCTTTTCAAGATCTTATGTTGGCAACACGAACTTTTAAGGTTGAGAATTTTCATGATGAAGAAGGATTTGGAGTTTTGTTGAAAGGTTGGATTAATCCATATGGAAACTATGCAGCAAGACCTGGAAAAGGGATTCCCATTGCAGTGGCGGCACTCAACTTAAATCAATGTCAAGATCAAAAGGAATGGCTAGATGAAATTAGTTATCTCAGTGAACTCAATCATCTAAATCTGGTTAAATTAGTAGGTTTTTGCATGGAGGATGACAAAAGACTACTAGTACATGAGTATATGTGTCAAGGAAGCTTAGAGCAACATCTATTCAGCAAAACTCTTCGACTTACATGGCCTATGAGGATGAAAATTGCAATTGGTGCTGCCAATGGCCTTGCATTTTTACACGAGGAAGCTTCAAGGCCTGTAATATTTCCAGATTTTAAGCCATCTAAGATCCTATTGGATATGGACTACAATGCAAAACTTTGGGACTTTGGTCTTGCTCGAGAAATTCATGCACCAACTAAAGTAGTAGCAAGAAAAGGCTATGAAGCCCCTGAGTATCTGATGACAGGACACATTACTTCTGAGAGCAATGTTTATAGCTTTGGGATAGTTCTGCTTGAAATACTGACAGGAAGAAGAGCCTTGGATGATACAATGCCAGCAGAGGAACAAAACCTGATAGAATGGTTGCGACCTCATCTCAGAAACAAAGCAAATTTTCATTATTTGATGGATCCTAGACTTGAAGGGCAATACCCTACAAAGTGTGCTCATAGGACAATGAGAATAGCTACTCATTGTCTTCGCCTAGACCCTAAAGCAAGACCCCTTATGAGTGAAGTAGTTCACAAGTTGAAGTATCTGCATGATGAGATGGTTGGTGAGCTTGGTCCCAAAACCTCACATGGTGTAGGCCCTTCTAACCATGCTAGTGGTAACAAGTATGCCCTTGGAAGATGTTCATCACCTTTAAGGTGTTTTCAAGGTTCACCACAGCAAGAATATTACCCTCTTCCCCTACCTCCAGCTCCACCAAATCCTTCACTTGCATCTTCGTCTAAAACCTAG 1446 0.4046 MLRSIHTRGLTENMESIDCIRADSSIGAKTKGRRNNKDVVRGSTKEGSRFWKKLRIFLGCMLWSSKGEASSNKIHQIHGRHVTNDVDRQQPISPTSSSNRRTSSHARLSVPDQELFEASLLLRRFAFQDLMLATRTFKVENFHDEEGFGVLLKGWINPYGNYAARPGKGIPIAVAALNLNQCQDQKEWLDEISYLSELNHLNLVKLVGFCMEDDKRLLVHEYMCQGSLEQHLFSKTLRLTWPMRMKIAIGAANGLAFLHEEASRPVIFPDFKPSKILLDMDYNAKLWDFGLAREIHAPTKVVARKGYEAPEYLMTGHITSESNVYSFGIVLLEILTGRRALDDTMPAEEQNLIEWLRPHLRNKANFHYLMDPRLEGQYPTKCAHRTMRIATHCLRLDPKARPLMSEVVHKLKYLHDEMVGELGPKTSHGVGPSNHASGNKYALGRCSSPLRCFQGSPQQEYYPLPLPPAPPNPSLASSSKT* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0237 481 PANTHER TYROSINE KINASE FAMILY PROTEIN 81 429 - -
Vra1g0237 481 Gene3D Transferase(Phosphotransferase) domain 1 223 422 - -
Vra1g0237 481 MobiDBLite consensus disorder prediction 80 106 - -
Vra1g0237 481 Gene3D Phosphorylase Kinase; domain 1 112 222 - -
Vra1g0237 481 MobiDBLite consensus disorder prediction 461 481 - -
Vra1g0237 481 SUPERFAMILY Protein kinase-like (PK-like) 116 415 IPR011009 -
Vra1g0237 481 MobiDBLite consensus disorder prediction 86 106 - -
Vra1g0237 481 Pfam Protein tyrosine and serine/threonine kinase 148 411 IPR001245 GO:0004672|GO:0006468
Vra1g0237 481 PANTHER OS01G0588500 PROTEIN-RELATED 81 429 - -
Vra1g0237 481 ProSiteProfiles Protein kinase domain profile. 137 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0237 Vra-Chr1 2988466 3002486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0237 58 414 Glycoside Hydrolase AT3G07070 38.043 1.26e-81 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra1g0237 PK_Tyr_Ser-Thr 4.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0237 - - var:108344548 747.273