Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0236 ATGGCCTTCCCTCCCTCTCACACCTTCATGTTCCAAACCCATGAAGATCATGACCACCACCAACTCCACCTACGCTCCACCTCTTCCTCTCTCAACGCCTTCCCCTCTTTTCCACCCCATCACTTTCAAGGGGGTGGTGCAGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTGTCAGATGATGGATCTCAGCTAGGGGAGAAGAAGAAGAGGCTGAGTTTGGAGCAGGTGAAGGCACTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCCAAGGCTTTGGGGCTTCAACCGAGGCAAATCGCTATATGGTTCCAGAATAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAGTTCTAAAGAAGCAGTTTGAAGCTGTGAAAGCTGATAATGACTCCCTCAAGGCTCAGAATCAGAAGCTACATGCAGAGCTACAAAGTCTGAAAAATAGGGACTGCTGTGAAACCGGAACAGTAGTTAGCCACAAGAAAGACACTGAGGGTTCTTGGAGCAATGGAAGCAACAACAGTTCAGAAATCAACTTGGACCTCTCAAGAACACCAGTGATGAACAGTCCTGTGTCTTCTCAGAATGGAAAAAGCCTTCTACCAACTTCCCACAAGCCCACAACCATGACTCAACTCCTCCAAAGCTCATCAAGATCAGATCTCCAAGATGAAAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGACCGAGCAGCAGCACCAGTTTCATTAA 849 0.4782 MAFPPSHTFMFQTHEDHDHHQLHLRSTSSSLNAFPSFPPHHFQGGGAGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAELQSLKNRDCCETGTVVSHKKDTEGSWSNGSNNSSEINLDLSRTPVMNSPVSSQNGKSLLPTSHKPTTMTQLLQSSSRSDLQDESFCNMFHNIDEQQNFWPWTEQQHQFH* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0236 282 SMART HOX_1 83 144 IPR001356 GO:0003677
Vra1g0236 282 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 282 - -
Vra1g0236 282 SUPERFAMILY Homeodomain-like 76 142 IPR009057 -
Vra1g0236 282 Gene3D - 77 156 - -
Vra1g0236 282 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Vra1g0236 282 Pfam Homeobox associated leucine zipper 140 180 IPR003106 GO:0006355|GO:0043565
Vra1g0236 282 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677
Vra1g0236 282 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677
Vra1g0236 282 Pfam Homeodomain 85 138 IPR001356 GO:0003677
Vra1g0236 282 Coils Coil 132 180 - -
Vra1g0236 282 CDD homeodomain 85 141 IPR001356 GO:0003677
Vra1g0236 282 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Vra1g0236 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 282 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0236 Vra-Chr1 2967418 2970436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0236 1 276 Homeobox Transcription Factor Family AT3G01220 51.203 1.23e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra1g0236 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0236 K09338 - gmx:100790803 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0236 1 2967418 2970436 Vra1g0236 1 2967418 2970436 ECH