Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0228 ATGATGAGGGAGCGATGGAGTCAAATGGGATCATTAATGGCGACTGTGTTGTTCATGTACACCATTTTTGAGCGATTCTTCCCTTCTTCCTTTCGTGACCGTCTTCAGGCCTATGCTCAAAAAGTGGCAAACCATTTCAACCCTTATATCCAAATTACCTTTCCTGAGTTTTCAGGGGAAAGATTGAAGAAAAGTGAAGCATACAATGCCATCCAAATCTACCTCAGTGCAAACTCATCTCAGAGAGCCAAAAGACTCAAAGCTGAAGTGGTGAAGGATAGCCAAAACCCACTGGTTCTCAGCATGGATGACAATGAAGAGATCACTGATGAGTTCCAAGGTGTCAAAGTGTGGTGGAGTGCCAAAAAAGTAAGCTCCAATCCTCAAAAGTACAACCCTTTCTCTTACTACGATTCCTCTGATGAGAAAAGGTTCTATAAGCTCACTTTCCATAGAAGATACCGTGATATCATCACCATGTCTTACATCAAGCATGTGTTGGAAGAGGGCAAGGAAATTGAATTGACAAACAGGCAGTTGAAGCTTTACACCAACAATCCCAGCAGTGGTGGGTATGGTTACAAGCAATCAAAGTGGAGCCACATAGTGTTTGAGCACCCTGCCTCTTTTGAAACACTGGCAATGGATCAGAAAAGGAAGGAAGATATCCTGAAAGACCTTACTAAATTTAAGAAGGGAAAGGAGTATTATTCAAAGATAGGTAAGGCTTGGAAAAGAGGGTATCTTTTGTATGGCCCTCCAGGGACTGGGAAGTCTACCATGATAGCTGCTATTGCTAAGTTCATGAANTATGATGTNTATGATCTNGAGTTGACAGCAGTGAAGGACAANACTGAGTTGANAAANTTGTTGATTGAAACTCCAAGTAAGTCTATTACGGTGATTGAGGACATTGATTGTTCTCTTGATCTTACTGGGCAGAGGAAGAAGAAAAAAGAAGAGGTTGAGAGTGAAGAACCAAAAGATCCTATGAGGAAGAATGAAGAGGAGAGTAGCAAGAGCAGCAAGGTAACTCTATCTGGGTTGCTGAATTTTATTGATGGGATTTGGTCAGCTTGTGGAGGTGAGAGGATCATCATTTTCACCACAAATTATGTGGAGAAACTTGACCCTGCTCTCATCAGGAGAGGGAGGATGGATAAGCACATTGAGATGTCCTATTGTTGTTTTGATGCATTCAAGGTGCTGGCCAAGAACTACTTGGATGTTGAGTCTCACCTTTTGTTTGGTAGAATTGGAACATTGTTGAAAGAGACAGAAATGTCACCTGCTGATGTTGCTGAGAATCTAATGCCAAAGTCTGAGGATGAAGATGTGGAGACTTGCCTGGAGAATTTGATTAATGCTCTTAAGAAGAACAAGGAGGAGAATGCAAATAAAAAGGAAGAAGAAGAAGCAGAGGAAATTTTGGGGGAGAAAGCCAAAGAAGAATATACTCAGAGTAAGGAAATAAACAGAGAAAATGGCAGAAGAAGAAGAACAGAAAGAGTTGGAAGAGGAGAAAGCCAAAGAAGAATCTACTCAGAATAA 1551 0.4101 MMRERWSQMGSLMATVLFMYTIFERFFPSSFRDRLQAYAQKVANHFNPYIQITFPEFSGERLKKSEAYNAIQIYLSANSSQRAKRLKAEVVKDSQNPLVLSMDDNEEITDEFQGVKVWWSAKKVSSNPQKYNPFSYYDSSDEKRFYKLTFHRRYRDIITMSYIKHVLEEGKEIELTNRQLKLYTNNPSSGGYGYKQSKWSHIVFEHPASFETLAMDQKRKEDILKDLTKFKKGKEYYSKIGKAWKRGYLLYGPPGTGKSTMIAAIAKFMXYDVYDLELTAVKDXTELXXLLIETPSKSITVIEDIDCSLDLTGQRKKKKEEVESEEPKDPMRKNEEESSKSSKVTLSGLLNFIDGIWSACGGERIIIFTTNYVEKLDPALIRRGRMDKHIEMSYCCFDAFKVLAKNYLDVESHLLFGRIGTLLKETEMSPADVAENLMPKSEDEDVETCLENLINALKKNKEENANKKEEEEAEEILGEKAKEEYTQSKEINRENGRRRRTERVGRGESQRRIYSE* 517
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0228 516 Gene3D - 391 459 - -
Vra1g0228 516 Pfam ATPase family associated with various cellular activities (AAA) 249 393 IPR003959 GO:0005524|GO:0016887
Vra1g0228 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 441 IPR027417 -
Vra1g0228 516 CDD AAA 245 394 - -
Vra1g0228 516 Pfam Domain associated at C-terminal with AAA 27 121 IPR025753 -
Vra1g0228 516 MobiDBLite consensus disorder prediction 318 340 - -
Vra1g0228 516 PANTHER BCS1 AAA-TYPE ATPASE 4 487 - -
Vra1g0228 516 Gene3D - 198 390 IPR027417 -
Vra1g0228 516 ProSitePatterns AAA-protein family signature. 364 383 IPR003960 GO:0005524|GO:0016887
Vra1g0228 516 SMART AAA_5 244 396 IPR003593 -
Vra1g0228 516 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 4 487 - -
Vra1g0228 516 Coils Coil 450 479 - -
Vra1g0228 516 MobiDBLite consensus disorder prediction 460 516 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vra1g0228 Vra-Chr1 2846065 2847908 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0228 223 392 Calmodulin-binding Proteins AT3G56690 25.843 1.44e-08 55.8
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0228 1 2846065 2847908 Vra1g0228 1 2846065 2847908 ECH
Vra4g0975 4 16855275 16857001 Vra1g0228 1 2846065 2847908 ECH
Vra1g0228 1 2846065 2847908 Vra4g0976 4 16865268 16867510 PCT
Vra4g0975 4 16855275 16857001 Vra1g0228 1 2846065 2847908 PCT