Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0225 ATGATGAGGGAGCTATGGAGTCAAATGGGATCATTAATGGCAACTGTGGTGTTCATGTACACAGTTTTTGAGCGATTCTTCCCTTCTTCCTTTCGTGACCGTCTTCAGGCATATGCTCAAAAAGTGACAAATCATTTCAACCCTTATATCCAAATTACCTTTCCTGAGTTTTCAGGGGAAAGATTGAAGAAAAGTGAAGCATACAATGCCATCCAAACCTACCTCAGTGCAAACTCCTCTCAGAGAGCCAAAAGACTCAAAGCTGAAGTGGTGAAGGATAGTCAAACCCCACTGGTCCTCAGCATGGATGACAACGAAGAGATCACTGATGAATTCCAAGGCGTCAAAGTGTGGTGGAGTGCAAACAAAGTAAGCTCCAATCCTCAGAGGTACAACCCTTTCTCTTACTACGGTTCCTCTGATGAGAAAAGGTTCTACAAGCTCACTTTCCACAGAAGCTACCGTGATATCATCACCATGTCTTACATCAAGCATGTGTTGGAAGAGGGGAAGGAAATTGAGTTGACAAACAGGCAGTTGAAGCTTTACACCAACAATCCCAGCAGTGGTTGGTATGGTTACAAGCAGTCAAAGTGGAGCCACATAGTGTTTGAGCACCCTGCCTCTTTTGAAACACTGGCAATGGATCAGAAAAGGAAGGAAGATATCCTGAAAGACCTTACTAAATTTAAGAAGGGAAAGGAGTATTATTCAAAGATAGGTAAGGCTTGGAAAAGAGGGTATCTTTTGTATGGCCCTCCAGGGACTGGGAAGTCTACCATGATAGCTGCTATTGCTAAGTTCATGAACTATGATGTGTATGATCTCGAGTTGACAGCAGTGAAGGACAANACTGAGTTGANAAANTTGTTGATTGAAACTCCAAGTAAGTCTATTACGGTGATTGAGGACATTGATTGTTCTCTTGATCTTACTGGGCAGAGGAAGAAGAAAAAAGAAGAGGTTGAGAGTGAAGAACCAAAAGATCCTATGAGGAAGAATGAAGAGGAGAGTAGCAAGAGCAGCAAGGTAACTCTATCTGGGTTGCTGAATTTTATTGATGGGATTTGGTCAGCTTGTGGAGGTGAGAGGATCATCATTTTCACCACAAATTATGTGGAGAAACTTGACCCTGCTCTCATCAGGAGAGGGAGGATGGATAAGCACATTGAGATGTCCTATTGTTGTTTTGATGCATTCAAGGTGCTGGCCAAGAACTACTTGGATGTTGAGTCTCACCTTTTGTTTGGTAGAATTGGGAGATTATTGAAAGAGACAGAAATGTCGCCTGCTGATGTTGCTGAGAATCTAATGCCAAAGTCTGAGGATGAAGATGTGGAGTCTTGCCTGGAGAATTTGATTACTGCTCTTGAGAAGAACAAGGAGGAGAATGCAAAGAAAAAGGAAGAAGAAGAAGCACAGAAAAAGTTGGAGGAGGAGAAGGCCAAAGAAGAATCTACTCAGAATAAGGAAATAAACAAAGAAAAAACTAGGGAGAATGGGGTGAAGGAAAATGGGTTTTGTTGA 1527 0.4204 MMRELWSQMGSLMATVVFMYTVFERFFPSSFRDRLQAYAQKVTNHFNPYIQITFPEFSGERLKKSEAYNAIQTYLSANSSQRAKRLKAEVVKDSQTPLVLSMDDNEEITDEFQGVKVWWSANKVSSNPQRYNPFSYYGSSDEKRFYKLTFHRSYRDIITMSYIKHVLEEGKEIELTNRQLKLYTNNPSSGWYGYKQSKWSHIVFEHPASFETLAMDQKRKEDILKDLTKFKKGKEYYSKIGKAWKRGYLLYGPPGTGKSTMIAAIAKFMNYDVYDLELTAVKDXTELXXLLIETPSKSITVIEDIDCSLDLTGQRKKKKEEVESEEPKDPMRKNEEESSKSSKVTLSGLLNFIDGIWSACGGERIIIFTTNYVEKLDPALIRRGRMDKHIEMSYCCFDAFKVLAKNYLDVESHLLFGRIGRLLKETEMSPADVAENLMPKSEDEDVESCLENLITALEKNKEENAKKKEEEEAQKKLEEEKAKEESTQNKEINKEKTRENGVKENGFC* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0225 508 MobiDBLite consensus disorder prediction 460 502 - -
Vra1g0225 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 460 IPR027417 -
Vra1g0225 508 Gene3D - 391 460 - -
Vra1g0225 508 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 4 489 - -
Vra1g0225 508 PANTHER BCS1 AAA-TYPE ATPASE 4 489 - -
Vra1g0225 508 CDD AAA 245 394 - -
Vra1g0225 508 Coils Coil 450 495 - -
Vra1g0225 508 Pfam Domain associated at C-terminal with AAA 27 121 IPR025753 -
Vra1g0225 508 MobiDBLite consensus disorder prediction 460 508 - -
Vra1g0225 508 Pfam ATPase family associated with various cellular activities (AAA) 249 393 IPR003959 GO:0005524|GO:0016887
Vra1g0225 508 Gene3D - 198 390 IPR027417 -
Vra1g0225 508 MobiDBLite consensus disorder prediction 318 340 - -
Vra1g0225 508 ProSitePatterns AAA-protein family signature. 364 383 IPR003960 GO:0005524|GO:0016887
Vra1g0225 508 SMART AAA_5 244 396 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0225 Vra-Chr1 2808653 2810531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0225 223 392 Calmodulin-binding Proteins AT3G56690 25.843 4.44e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0225 - - gmx:100787917 834.713