Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0220 ATGGACTTTCTCCTAAATTGCTTAACCTTAAACACCACCACTCTTCTTGCATCGTTTCTTTCTCTAATCTTGTTATTTTTCTATCTATATCGAAGAATTTCTTCTGAGAAACGGGCTCCAATAGTGAAAGGTGCATGGCCAATACTCGGTCATCTTTCACTGATAAACGGTTCAAAAACACCCCATAGAACTTTAGCTGCTTTGGCTGACAAGTATGGACCCTTGTTCACCATCAAACTCGGTGTGAAAGAGGCTTTGGTGCTCAGCAACTGGGAAATGTCTAAGGAACTCTTCACCACAAACGACGTTGCCGTTTCATCACGCCCTAAACTCGTTGCTGGGGAAGTCATGTCCTACAACCAAGCCTTCGTAGGGTGGGCTCCATACGGACCCTATTGGCGAGAGCTTCGAAAGATTGTGACTAAAGAGTTTCTCTCCAACCGCAGAATAGAGCAACTCAGCCACATTCGTATCTCAGAGGTTCAAACCTCGTTCAAAGAGCTCTACGATTTATGCTATACTAGTGTAAACAACAAGAAGGAGAATGAATCTAGTTATGGTGCTGCTACTCTGGTGGACATGAAAGAATGGCTTGAACATTTGACTTTCAATATAATAGTGAGGATGGTGGTGGGGAAGAGGTACTTTGGTGTGGCGCATGTGGAGGGCAAGGAGAAGGCAGAAAGGTTTATGAAGAATTTAGAGGAGTTCATGAATTTGATGGGCACTTTCACTGTGGCTGATGGGGTTCCTTGCTTGAGGTGGTTGGATTTGGGGGGCCATGAGAAGGCCATGAAAGCAACGGCTAAGGAAATGGACAATTTGTTGAGTGAGTGGTTGGAGGAGCACCGTGGAAAGGTTAAGGGCGATCAAGACTTCATGGATGTGATGATTTCAGCACTTAATGGAGCTCCGATTGAGGGGTTTGATGCTGATACCATTTGCAAAGCCACTACCCTGGAATTGATTTTGGGTGGAACTGATTCAACTGCAGTTACTCTTACATGGGCACTTAGTCTGCTAGTACGAAATCCTCTTGCAATGGAAAAGGCTAAAGAAGAAATTGACATGCATATTGGGAAAGATGGATACATAAGAGAATCAGACATAAGCAAACTTGTGTATCTTCAAGTCATAATCAAAGAGACATTGAGATTGTATCCACCAGCACCTCTTTCATCACCTCGTGTATTCACAGAAAACTGCATCTTAGGTGGCTACCACATAAGAAAGGGAACTCGGCTAATGCATAACCTGTGGAAGATCCACAGAGACCCTAGTGTTTGGTCAGATCCATTAGAATTCAAACCAGAAAGGTTCCTCACCACTCATCAACATGTAGATCTGAAAGGTCGACATTTTGAGTTGTTACCATTTGGAAGTGGGAGAAGAATGTGTGCTGGAATGTCCCTTGGCTTAAACGTGCTTCATTTCACTTTGGCTAATATGTTGCATTCCTTTGACATCTCAAATCCTTCCACTGAACCTGTTGATATGACTGAGTTCTTTGGATTTGTCAATACCAGAGCTACTCCTCTGGAGGTTTTGGTTAAGCCACGCCTACCTCCAAACCATTATGAATCTTTTTAA 1590 0.4333 MDFLLNCLTLNTTTLLASFLSLILLFFYLYRRISSEKRAPIVKGAWPILGHLSLINGSKTPHRTLAALADKYGPLFTIKLGVKEALVLSNWEMSKELFTTNDVAVSSRPKLVAGEVMSYNQAFVGWAPYGPYWRELRKIVTKEFLSNRRIEQLSHIRISEVQTSFKELYDLCYTSVNNKKENESSYGAATLVDMKEWLEHLTFNIIVRMVVGKRYFGVAHVEGKEKAERFMKNLEEFMNLMGTFTVADGVPCLRWLDLGGHEKAMKATAKEMDNLLSEWLEEHRGKVKGDQDFMDVMISALNGAPIEGFDADTICKATTLELILGGTDSTAVTLTWALSLLVRNPLAMEKAKEEIDMHIGKDGYIRESDISKLVYLQVIIKETLRLYPPAPLSSPRVFTENCILGGYHIRKGTRLMHNLWKIHRDPSVWSDPLEFKPERFLTTHQHVDLKGRHFELLPFGSGRRMCAGMSLGLNVLHFTLANMLHSFDISNPSTEPVDMTEFFGFVNTRATPLEVLVKPRLPPNHYESF* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0220 529 PRINTS P450 superfamily signature 325 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 PRINTS P450 superfamily signature 378 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 PRINTS P450 superfamily signature 457 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 PRINTS P450 superfamily signature 466 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 PRINTS E-class P450 group I signature 314 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 PRINTS E-class P450 group I signature 334 360 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 PRINTS E-class P450 group I signature 377 395 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 PRINTS E-class P450 group I signature 418 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 PRINTS E-class P450 group I signature 456 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 PRINTS E-class P450 group I signature 466 489 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 PANTHER CYTOCHROME P450 82A3 1 528 - -
Vra1g0220 529 Pfam Cytochrome P450 45 508 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 SUPERFAMILY Cytochrome P450 45 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0220 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 459 468 IPR017972 GO:0005506|GO:0016705
Vra1g0220 529 PANTHER CYTOCHROME P450 82C3-RELATED 1 528 - -
Vra1g0220 529 Gene3D Cytochrome P450 33 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0220 Vra-Chr1 2738922 2740952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0220 13 521 Cytochrome P450 AT4G31940 46.667 1.05e-168 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0220 - K23136 gmx:100789386 836.639