Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0213 ATGGGGTTTGGGAGCAATGCAGTTCAAGCAGGGAGTTTGGATGTGGACAAGTCAAAGGGCAGGAAGAACAAGGAAGGTGGTGTGAAGGAGAGAAAATGGGGGTTTAGATTTAGCATCTTTGGGAGTTGCATACCTTCAAAATCAAAAGTTGATAGCACAAAAGTTAGTGGCACTAGTGCCCGTAATAATGGTCAAAATGTTAAGTCAGTGGTAACTGAATCAGAGGAAAACAAATCTGCATCTGATAGAATCACAAAGGAAACAGTTGCTCCTCCGGAGTCCTCTACCACAACCAGTGATGCAGAAAGTAACCCTTCAACTCCAATATTCAGTGAGGAGTTGAAGGTTGCTTCTTGCCTGAGAAAATTCACATTCAACGGACTTAAGGTGGCCACAAGGAATTTTAGACCAGAGAGTCTTCTTGGTGAAGGAGGGTTTGGTTGTGTCTTCAAGGGTTGGATTGAAGAGAATGGAACTGCACCTGTGAAACCAGGTACCGGGCTTACGGTTGCGGTCAAGACCCTCAACCACAATGGACATCAAGGTCACAAAGAGTGGCTTGCTGAGTTAAATTATCTTGGTGATCTTGTCCATCCAAATCTAGTTAAACTGGTTGGTTTCTGCATTGAAGATGACCAAAGATTACTGGTTTATGAGTTTATGCCCAGAGGCAGTTTGGAAAACCACCTCTTTAGAAGACCCCTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAGGGTCTTGCTTTTCTCCACGAAGAGGCTCAAAGACCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGGAATACAATGCCAAGCTCTCTGATTTTGGACTTGCCAAAGATGGTCCTGAAGGGGAAAAGACACATGTGTCAACAAGAGTTATGGGGACGTATGGTTATGCGGCCCCCGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTACAGCTTTGGAGTAGTGCTACTTGAAATGCTCACCGGCCGGCGATCCATTGACAAGAAGAGACCAAATGGGGAACACAATCTGGTGGAGTGGGCAAGACCTGTTCTTGGAGACCGGAGGATGTTCTACCGGATAATCGACCCCCGCCTCGAAGGTCACTTCTCGGTTAAAGGGGTGCAGAAAGCTGTGCAGCTTGCTGCTCAATGCCTTAGCCGTGATCCAAAATCCAGACCCTTGATGAGTGAAGTTGTTCAAGCTTTGAAGCCTTTACCAAGCCTCAAGGACATGGCTATCTCATCTTATCACTTCCAGATTGCGCGAGTAGACCGAACCATGTCGATGCCGAATCATAAAAATGGCATCAGAACACAGATAGTATCTGTGTCAAGGAAGGGTCAACCTGTAAGGACATTGTCTAGCTCAAATGTTCCACATGGTTCTCCATACATTCGATATACCAAGTCTCCAAAACCTACTGGGTAA 1467 0.4499 MGFGSNAVQAGSLDVDKSKGRKNKEGGVKERKWGFRFSIFGSCIPSKSKVDSTKVSGTSARNNGQNVKSVVTESEENKSASDRITKETVAPPESSTTTSDAESNPSTPIFSEELKVASCLRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHNGHQGHKEWLAELNYLGDLVHPNLVKLVGFCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKKRPNGEHNLVEWARPVLGDRRMFYRIIDPRLEGHFSVKGVQKAVQLAAQCLSRDPKSRPLMSEVVQALKPLPSLKDMAISSYHFQIARVDRTMSMPNHKNGIRTQIVSVSRKGQPVRTLSSSNVPHGSPYIRYTKSPKPTG* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0213 488 MobiDBLite consensus disorder prediction 45 74 - -
Vra1g0213 488 MobiDBLite consensus disorder prediction 1 27 - -
Vra1g0213 488 Gene3D Phosphorylase Kinase; domain 1 119 220 - -
Vra1g0213 488 PANTHER OS01G0588500 PROTEIN-RELATED 65 480 - -
Vra1g0213 488 ProSitePatterns Protein kinases ATP-binding region signature. 141 173 IPR017441 GO:0005524
Vra1g0213 488 MobiDBLite consensus disorder prediction 43 107 - -
Vra1g0213 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Vra1g0213 488 MobiDBLite consensus disorder prediction 456 488 - -
Vra1g0213 488 PANTHER RECEPTOR-LIKE KINASE PLANT 65 480 - -
Vra1g0213 488 ProSiteProfiles Protein kinase domain profile. 135 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0213 488 MobiDBLite consensus disorder prediction 88 107 - -
Vra1g0213 488 Gene3D Transferase(Phosphotransferase) domain 1 221 435 - -
Vra1g0213 488 CDD STKc_IRAK 141 418 - -
Vra1g0213 488 Pfam Protein tyrosine and serine/threonine kinase 139 415 IPR001245 GO:0004672|GO:0006468
Vra1g0213 488 MobiDBLite consensus disorder prediction 456 476 - -
Vra1g0213 488 SUPERFAMILY Protein kinase-like (PK-like) 117 415 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0213 Vra-Chr1 2653458 2657605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0213 42 431 Glycoside Hydrolase AT3G07070 49.109 3.45e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra1g0213 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0213 - - gmx:100499647 884.404