Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0209 ATGAGAGGAAGTGGTGCAAAGGTTGTCTTCACCCTGTTGGTCACTCTGGCCATCACCATCCCATGCCTTGAGGCTGGCATTGCTAAATACGACGACTTTCTCAAAGCTCAAGCTAAAGAAGCCCGCGAAATCGCTATCGAGTCCTATGTGCCAACTCCTGAATTAGTCACCGGTGAGCTCAATCACCATGTTCATCTTGCCATCAAAAACAGCACAAGGAGGGGACTGAATGCGGCCATGAACCCTATTGGAGGGCGCTGTGACAGCACCAACCCCATTGACAATTGCTGGAGGTGCAACAAAGACTGGGCTAAAGACAGGTACCGCTTGGCCAGATGCGGAAAAGGGTTCGGAAGACGCGCAGTGGGAGGGCTCGGTGGACCCATTTACGTTGTCACCGATAACTCCGATGAGGACATGGTCAACCCTAAGCCAGGAACCCTCCGATATGCCGTCACNCAAAAGGGTCCACTTTGGATCATCTTCGAACGCAGCATGATCATNANTCTGAAGCAGGAGCTTCTCATTTCCTCCGACAAGACCATCGACGGTCGTGGTGCCAACGTTCTGATCAGTGACGGTGGTGGCCTCACCGTTCAGTTCGTGAACAACGTCATCATCCACGGCATTCGCATTAAGAACATTGTGCCTAAGGAGGGTGGCATGATCAGGGACTCCTACAACCANGTTGGACTGAGAACGAGGAGTGATGGTGATGCGATCTCCCTCTTCGGAGCCTCCAACGTGTGGATCGATCATGTTTCTCTCTCTAACGCTGCCGATGGACTGATCGATGTGATCCAAGGCTCCACAGCCATCACCATCTCCAANTGCCACATGACCAGACACAACGATGTGATGTTGTTTGGTGCGACTGACTCGTACACTGAGGACAAGATCATGCAGATAACAGTGGCATTCAACCATTTCGGGCAAGGACTGATCCAGAGGATGCCAAGGTGCAGATGGGGATTCTTCCACGTTCTTAACAACGATTACACTCACTGGATGATGTACGCCATTGGTGGAAGCGCAGGGCCAACTATTCTTAGCCAAGGAAACCGTTTCATTGCTCCCAACAACGACGCTGCAAAGGAGATCACACACAGAGATTATGCTACACCTGACGTCTGGAAAAACTGGCAGTGGCAATCCGACATGGACCTTCTGATGAACGGTGCCACTTTCAACACTTCAGGTGCTCCCATCAAGATGACACACAAGAAGGGTCTGATCATGAAGCCAAGAGATGGAACTCATGTCAGCAGACTCACACGCCATGCTGGCGCTCTCAACTGCTTTGTTGGCTTGCCTTGCTAG 1320 0.5121 MRGSGAKVVFTLLVTLAITIPCLEAGIAKYDDFLKAQAKEAREIAIESYVPTPELVTGELNHHVHLAIKNSTRRGLNAAMNPIGGRCDSTNPIDNCWRCNKDWAKDRYRLARCGKGFGRRAVGGLGGPIYVVTDNSDEDMVNPKPGTLRYAVTQKGPLWIIFERSMIXXLKQELLISSDKTIDGRGANVLISDGGGLTVQFVNNVIIHGIRIKNIVPKEGGMIRDSYNXVGLRTRSDGDAISLFGASNVWIDHVSLSNAADGLIDVIQGSTAITISXCHMTRHNDVMLFGATDSYTEDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWMMYAIGGSAGPTILSQGNRFIAPNNDAAKEITHRDYATPDVWKNWQWQSDMDLLMNGATFNTSGAPIKMTHKKGLIMKPRDGTHVSRLTRHAGALNCFVGLPC* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0209 439 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Vra1g0209 439 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Vra1g0209 439 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Vra1g0209 439 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Vra1g0209 439 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Vra1g0209 439 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Vra1g0209 439 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Vra1g0209 439 PRINTS Pollen allergen Amb family signature 410 433 IPR018082 -
Vra1g0209 439 PANTHER PECTATE LYASE 18-RELATED 5 439 IPR045032 GO:0030570
Vra1g0209 439 Pfam Pectate lyase, N terminus 27 76 IPR007524 GO:0030570
Vra1g0209 439 SMART amb_all 165 362 IPR002022 -
Vra1g0209 439 Gene3D - 90 432 IPR012334 -
Vra1g0209 439 SUPERFAMILY Pectin lyase-like 91 430 IPR011050 -
Vra1g0209 439 Pfam Pectate lyase 172 356 IPR002022 -
Vra1g0209 439 PANTHER PECTATE LYASE 5 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0209 Vra-Chr1 2602991 2611562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0209 9 439 Polysaccharide Lyase AT1G14420 55.357 8.22e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0209 K01728 - gmx:100785801 735.717