Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0203 ATGTCTCATTCTTCTAACTCCTTCGGTGGGTCCAGGGACGAGGGTAGAGGGTATGATGACGATGGGAGAGCATCTCTGTCCTCGTCCCATACGTCACCTGCCAGTTCGTCCTCCTCCTCCGGGAAAATGGGGAGCATTTCTGGTGTTAGGGTTGGTTCTTCAATTGGGGGCAAATCCAAAGGAGGGAGAAAGAACAAAGATGTTGTTCAAAGTAGTAGTGGAGAAGGTTCAAGATTTTGGAAGAAATTGAGAACTTTCCTAGGTTGCATGTTTTGGAGTTCCAAAGGGGAAGATTCCTCCATAAACAAAATCAACCAAGTTGATCATGGAAGACATGTTACAAATGATGTTGACAGACAGCAGCAGCCAATTGTCCCAAGATCATCGTCCAACAGAAGGTTAAGTAGCCATGCAAGATTGTGTGTTCCGGATCAAGAACTGTTTGAAGCTTCTTTGCTTCTTCGAAGGTTCACTTTTCAAGATCTTATGTTGGCAACAAGAACTTTTAAGGTTGAGAATTTTCATGATGAGGAAGGGTTTGGAGTTTTGTTGAAGGGTTGGATTAATCCATATGGAAACTATGCAGCAAAACCTGGAAAAGGGATTCCCATTGCAGTGAAGGCACTCAACTTAAACGAATGTCAAGATAAAAACGAATGGCTAGATGAAATTATTTATCTTAGTAAACTCCAACATTTAAATCTGGTTAGACTAGTCGGATTTTGTCTTGAGGATGACAAAAGGCTGCTTGTATACGAGCATATATGTGAAGGAAGTTTAGAGAAGCATCTTTTCAAGAGAGCTGTACACCTTACATGGCCTACGAGGATGAAAATCGCAATTGGTGCTGCTAATGGCATGTCATTTTTGCATGAGGAAGCTTCAAGACCATTAATATTTCGAGATTTTAAGACATCTAGTATCCTATTGGATAAGGATTACAACACAAAACTTTGTGACTTTGGTCTTGCAAAAGATGCTTCAGTAGGACATGAAATGCATACGACAACTAAAATGGTAGGATCTAAAGGCTACGAAGCCCCAGAATATATAATGACAGGAATCCTTACTCCAAAGAGCAATGTTTATAGCTTTGGAGTAGTTCTACTTGAACTATTGACAGGAAGAAGAGTTATAGATAAAACAATGCCTATAGAGGAGCAAAACTTGATAGAATGGTTAGGGCCTCGTCTTGGGAACAAAGCAAACTTCCATTATTTGATGGATCCTAGACTTGAAGGTCAATATCCAACAAAATTTGCTCATAGGACAATGAGGTTAGCTATTCATTGTCTTCGCCTTGACCCTAAAACAAGACCCCTTATGAGTGAAGTACTTCGTGAGTTAAAATCTTTGCATGATGGCATGCTTGGATCTTCAACCTCCCATGGAAGAAGGCATAAAGGTCCATCCAACCATGTTAGTCCTAACAAGTATGGTGTTGGAATATGTCCATCATCAAATTTTCCAAGGTGCTTCCAAGCCATGCCAGAACGTCAAGACTATCCTTTACCTCTACCTCCATCTCCATCAAATCCAAGAGTTAGATCTTCCTCAAATCCTAGTTTGGAAATTTATTCAACCTAG 1587 0.4045 MSHSSNSFGGSRDEGRGYDDDGRASLSSSHTSPASSSSSSGKMGSISGVRVGSSIGGKSKGGRKNKDVVQSSSGEGSRFWKKLRTFLGCMFWSSKGEDSSINKINQVDHGRHVTNDVDRQQQPIVPRSSSNRRLSSHARLCVPDQELFEASLLLRRFTFQDLMLATRTFKVENFHDEEGFGVLLKGWINPYGNYAAKPGKGIPIAVKALNLNECQDKNEWLDEIIYLSKLQHLNLVRLVGFCLEDDKRLLVYEHICEGSLEKHLFKRAVHLTWPTRMKIAIGAANGMSFLHEEASRPLIFRDFKTSSILLDKDYNTKLCDFGLAKDASVGHEMHTTTKMVGSKGYEAPEYIMTGILTPKSNVYSFGVVLLELLTGRRVIDKTMPIEEQNLIEWLGPRLGNKANFHYLMDPRLEGQYPTKFAHRTMRLAIHCLRLDPKTRPLMSEVLRELKSLHDGMLGSSTSHGRRHKGPSNHVSPNKYGVGICPSSNFPRCFQAMPERQDYPLPLPPSPSNPRVRSSSNPSLEIYST* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0203 528 MobiDBLite consensus disorder prediction 1 72 - -
Vra1g0203 528 PANTHER OS01G0588500 PROTEIN-RELATED 116 476 - -
Vra1g0203 528 MobiDBLite consensus disorder prediction 456 479 - -
Vra1g0203 528 ProSiteProfiles Protein kinase domain profile. 169 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0203 528 SUPERFAMILY Protein kinase-like (PK-like) 140 448 IPR011009 -
Vra1g0203 528 MobiDBLite consensus disorder prediction 24 47 - -
Vra1g0203 528 Gene3D Phosphorylase Kinase; domain 1 144 254 - -
Vra1g0203 528 PANTHER TYROSINE KINASE FAMILY PROTEIN 116 476 - -
Vra1g0203 528 Gene3D Transferase(Phosphotransferase) domain 1 256 463 - -
Vra1g0203 528 MobiDBLite consensus disorder prediction 499 528 - -
Vra1g0203 528 Pfam Protein tyrosine and serine/threonine kinase 180 449 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0203 Vra-Chr1 2511540 2526763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0203 151 475 Glycoside Hydrolase AT3G07070 43.769 3.17e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra1g0203 PK_Tyr_Ser-Thr 1.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0203 - - var:108344548 600.127