Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0200 ATGGCTGATGCCGCTGAGCCCAAAGCATTGCCAGAGGCAGAGAAGAAGAAAGAGCAGACTTTGCCTTTTTACAAGCTCTTCTCATTTGCTGACAAGTGTGATTGGATGCTCATGGTCTCCGGCAGCTTAGGAGCCATTGTTCATGGTTCCTCAATGCCAGTTTTCTTCCTGCTCTTTGGTGAAATGGTTAATGGTTTTGGCAAAAACCAAATGGACTTGAAGAAAATGACAGAAGAAGTATCAAAGTATGCTCTCTATTTCGTGTACCTTGGCCTTGTGGTTTGCATATCATCCTATGCAGAAATTGCATGCTGGATGTACACTGGGGAGAGACAAGTGAGCACACTGAGAAAGAAGTACTTGGAAGCAGTGCTTAAACAGGACGTTGGGTTCTTTGACACGGATGCAAGAACAGGAGATATTGTTTTCAGTGTCTCCACAGATACACTACTAGTTCAAGATGCTATAAGCGAGAAGGTGGGGAATTTCATACACTATCTATCAACGTTTCTGGCGGGTCTGGTGGTTGGTTTTGTGTCAGCATGGAGGCTCGCACTTCTGAGTGTTGCAGTGATTCCCGGGATTGCTTTTGCTGGTGGATTGTATGCTTACACACTCACTGGCCTCACATCAAAGAGTCGAGAATCTTATGCAAATGCAGGAATAATAGCTGAGCAGGCCATTGCTCAAGTTAGAACTGTTTACTCTTATGTTGGGGAGAGCAAGGCACTGAATTCTTATTCTGATGCAATACAAAACACTCTGAAACTTGGATACAAGGCAGGAATGGCCAAAGGTTTAGGCCTAGGATGCACATATGGAATAGCATGCATGTCGTGGGCACTGGTTTTCTGGTATGCTGGAGTTTTCATCAGGAATGGACAAACAGATGGAGGCAAGGCATTCACGGCTATTTTCTCAGCGATAGTTGGTGGCATGAGTTTGGGACAGTCCTTTTCCAATTTGGGTGCTTTCAGCAAAGGCAAAGCAGCGGGATACAAATTGATGGAGATCATCAAACAGAAACCCACCATAGTGGAAGATCCATCAGAAGGAAAGTGCCTAGCTGAGGTTAATGGCAACATTGAATTTAAAGATGTTACTTTCAGCTACCCTTCGAGGCCGGATGTGTTTATCTTTCGCAGTTTCTCAATCTTTTTCCCTGCTGGAAAAACTGTTGCGGTTGTTGGTGGCAGTGGATCTGGAAAGAGCACAGTCGTTTCCTTGATAGAAAGGTTCTATGATCCAAATGAAGGTCAGGTTCTGCTGGATAATGTGGACATTAAGACTCTGCAACTAAAATGGTTGCGTGATCAAATTGGATTGGTGAATCAAGAGCCTGCACTCTTTGCAACTACAATTCTAGAGAACATACTCTATGGAAAAGCTGATGCAACTATGGCTGAAGTGGAAGCTGCTACTTCTGCTGCAAATGCTCATAGTTTTATCACCTTGCTTCCTAATGGTTATAACACTCAGGTGGGAGAGCGAGGAGTTCAATTATCTGGGGGCCAAAAGCAGAGAATTGCAATTGCCAGAGCCATGTTGAAGAACCCAAAGATCCTTCTATTAGATGAAGCAACTAGTGCTCTTGATGCAGGGTCTGAAAGCATAGTTCAAGAGGCACTAGACAGGCTCATGGTTGGAAGAACAACTGTGGTTGTGGCACATCGTCTATCAACCATAAGGAATGTTGATACCATTGCAGTTATACAACAAGGACAAGTTGTTGAGACAGGCACACATGAAGAACTCATTGCCAAGGCAGGCACATATGCTTCACTCATTCGGTTCCAAGAAATGGTTGGAAATAGAGACTTCTCCAACCCATCAACTCGCCGGACTCGGTCGTCGCGGCTGAGCCATTCATTGTCAACAAAGTCCCTGAGTCTCAGGTCTGGCAGCCTGAGGAACTTGAGCTACCAGTACAGCACTGGTGCAGATGGCCGTATTGAGATGATATCAAATGCTGAAACAGATAAGAAAAATCCTGCTCCAGATGGATATTTCTTCAGGTTGCTCAAGTTGAATGCTCCGGAGTGGCCTTACTCAATCATGGGAGCTGTCGGTTCTGTTCTTTCTGGATTCATTGGCCCTACTTTTGCTATTGTTATGAGCAACATGATTGAGGTCTTTTACTTCAGAAATTATGCTTCCATGGAGAGGAAGACTAAGGAGTATGTCTTCATTTACATTGGTGCCGGTCTCTATGCAGTTGGTGCATACTTGATACAGCATTACTTCTTTAGTATCATGGGAGAAAACCTCACCACAAGGGTCAGAAGAATGATGCTTGCCGCTATTTTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAGCACAACTCAAGCCTTGTTGCAGCTCGCCTTGCCACTGATGCCGCTGATGTGAAGTCTGCAATTGCTGAGAGGATATCAGTGATTCTGCAGAACATGACATCTCTCCTTACTTCTTTTATAGTTGCCTTCATAGTGGAATGGAGGGTTTCCTTGCTCATCTTGGCAACCTTCCCTCTCCTTGTGCTAGCCAACTTTGCTCAGCAATTATCTCTAAAAGGGTTTGCTGGAGACACAGCCAAGGCTCATGCAAAGACGAGTATGATAGCAGGAGAGGGAGTGAGCAACATCAGAACAGTTGCAGCATTCAATGCTCAAACCAAGATGTTATCAGTGTTCTGCAACGAGCTGCGTGTGCCTCAGCGCCAGAGTCTGCGGCGGAGCCTCACGTCGGGCTTTTTGTTCGGTCTCTCTCAGCTTGCCCTCTATGCTTCCGAGGCTCTCATTCTATGGTACGGGGCACATTTGGTGAGCAAGGGTGCTTCAACCTTCTCAAAGGTGATCAAAGTGTTTGTGGTCCTCGTGATAACGGCGAATTCAGTGGCGGAAACCGTGAGCCTGGCGCCGGAGATAATCCGCGGCGGCGAGGCGGTGGGGTCGGTGTTCTCGATCCTTGATCGGTCGACGAGGATTGACCCTGATGATCCCGACGCCGAGCCGGTGGAATCTCTTCGCGGGGAGATCGAGCTGAGGCATGTTGATTTTGCATACCCTTCGAGGCCTGATGTGATGGTGTTCAAGGATTTGAGCCTGAGGATCCGTGCAGGGCAGAGCCAGGCTCTTGTGGGGGCAAGTGGGTCAGGGAAGAGTTCTGTGATTGCGTTGATAGAGAGATTCTACGACCCTATTGCTGGGAAAGTGATGGTGGATGGGAAGGACATAAGGAAGTTGAACCTGAAGTCTCTGAGGCTGAAGATAGGGTTGGTGCAGCAAGAACCAGCACTTTTTGCAGCGAGCATTTTCGAGAACATTGCATATGGAAAAGATGGTGCAAGTGAGAGTGAGGTGATAGAGGCTGCACGTGCAGCGAACGTGCATGGGTTCGTGAGTGGTTTGCCGGAGGGTTATAAGACACCTGTTGGTGAGAGAGGGGTGCAACTTTCTGGAGGGCAGAAGCAAAGGATCGCCATTGCTAGGGCAGTGCTCAAGGACCCTACGATTCTTCTTCTGGACGAGGCCACGAGTGCCCTAGATGCTGAGTCTGAGTGTGTGCTACAAGAGGCCTTGGAGAGGCTAATGAGGGGTCGCACCACGGTGCTTGTGGCTCACCGTTTGTCGACCATCAGAGGGGTCGATTGCATCGGAGTGGTTCAAGATGGTCGCATTGTGGAGCAAGGTAGCCATGCAGAGCTTGTTAGCAGACCAGAAGGGGCATATTCTAGACTCTTGCAGCTACAACATCATCACATTTGA 3750 0.4749 MADAAEPKALPEAEKKKEQTLPFYKLFSFADKCDWMLMVSGSLGAIVHGSSMPVFFLLFGEMVNGFGKNQMDLKKMTEEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDPSEGKCLAEVNGNIEFKDVTFSYPSRPDVFIFRSFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKADATMAEVEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKAGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYFRNYASMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQTKMLSVFCNELRVPQRQSLRRSLTSGFLFGLSQLALYASEALILWYGAHLVSKGASTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPDAEPVESLRGEIELRHVDFAYPSRPDVMVFKDLSLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFENIAYGKDGASESEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHAELVSRPEGAYSRLLQLQHHHI* 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0200 1249 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 14 1247 IPR039421 -
Vra1g0200 1249 SMART AAA_5 389 575 IPR003593 -
Vra1g0200 1249 SMART AAA_5 1034 1220 IPR003593 -
Vra1g0200 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 335 - -
Vra1g0200 1249 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 14 1247 - -
Vra1g0200 1249 SUPERFAMILY ABC transporter transmembrane region 25 347 IPR036640 GO:0005524|GO:0016021
Vra1g0200 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 996 1245 IPR027417 -
Vra1g0200 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g0200 1249 CDD ABC_MTABC3_MDL1_MDL2 1007 1245 - -
Vra1g0200 1249 SUPERFAMILY ABC transporter transmembrane region 666 986 IPR036640 GO:0005524|GO:0016021
Vra1g0200 1249 Gene3D - 998 1248 IPR027417 -
Vra1g0200 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1243 IPR003439 GO:0005524
Vra1g0200 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 599 IPR027417 -
Vra1g0200 1249 Gene3D - 360 623 IPR027417 -
Vra1g0200 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 990 - -
Vra1g0200 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 685 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g0200 1249 Pfam ABC transporter 1026 1174 IPR003439 GO:0005524
Vra1g0200 1249 Pfam ABC transporter 384 529 IPR003439 GO:0005524
Vra1g0200 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Vra1g0200 1249 Gene3D ABC transporter type 1, transmembrane domain 85 981 IPR036640 GO:0005524|GO:0016021
Vra1g0200 1249 ProSitePatterns ABC transporters family signature. 1146 1160 IPR017871 GO:0005524
Vra1g0200 1249 CDD ABC_MTABC3_MDL1_MDL2 362 599 - -
Vra1g0200 1249 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Vra1g0200 1249 Pfam ABC transporter transmembrane region 43 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g0200 1249 Pfam ABC transporter transmembrane region 685 956 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0200 Vra-Chr1 2440802 2451465 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0200 2 1245 Calmodulin-binding Proteins AT2G36910 53.481 0.0 1347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0200 K05658 - gmx:100797124 2299.63