Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0197 ATGGATCGCAGCTACACGTTTTCCTCTTCGTTCCTTCTGCTAACTCTGTTGGGGTTTCACGTGTTCCTCGCTTCGTCGCAGGTCGAGGACGATGTCAAATGCCTCCGTGGCATCAAAGAAGCTGTTTTGGATCCGCAGGGCCACCTCTCCCCGTGGCGTTTCGACAACACCACCGTTGGTTTCATCTGCGACTTCGTGGGTGTGACTTGCTGGAACCAAAGGGAGAACCGGGTCTTGAGTTTGGACTTCCAAGATTTCAAACTTTCGGGTCGGATTCCCGAGGCTTTGCAGTACTGTGGGAAGAGCCTTCAAAGGTTGAATCTTGCTTCAAATTCTTTCTCCTCCGAGATCCCGCACGAGATCTGTAAGTGGATGCCGTTTTTGGTTGCTCTAGATTTGTCTGGTAATCAGCTCTCTGGGCCTATTCCTCCCACACTTGTGAATTGTTCATATTTGAATGAGTTGATGTTGTCGGATAACCAGCTCTCTGGGTCAATCCCCTTTGAGCTGGGGAGTTTGAGTAGGCTCAAGAAGTTTTCTGTGGCCAATAATAGACTAAGTGGGACAATTCCTGAGTTTTTCCATGGGTTTGAAAGGGAGGGTTTTGAGGGGAACAGTGGGTTATGTGGGGGTCCTCTCGGATCCAAGTGTGGTGGGATGAGTAAGAAGAACCTTGCTATTATCATTGCTGCTGGGGTGTTTGGTGCTGCTGCTTCATTGTTGCTGGCTTTTGGCCTGTGGTGGTGGTACCATTTGGGTGGGAAGAAGAAGAAGAAGGGATATGGGGTTGGTTCTAGCGTGGGTGCTGCTGGTGATTGGGCTTTGAGGCTAAGAGGGTATAAGCTTGTGCAAGTTAGTCTCTTTCAGAAGCCTATTGTAAAGGTGAAGTTGGGGGATTTGATGGCTGCTACCAATAATTTCAGTGGGCAGAATGTTCTTTTTGCGACAAGAACAGGGACAACGTACAAGGCTGATCTCCCAGATGGTTCCACGCTAGCAGTAAAGCGCTTGAGTGCATGTAGGATTGGGGAGAAGCAGTTTGGGATGGAGATGAACCGGTTGGGGCAGGTTAGGCACCCAAATTTGGCTCCTCTGTTGGGGTACTGTGTGGTGGAGGAGGAGAAGTTGTTGGTTTACAAGCACATGTCTAATGGAACTTTGTATTCCTTGTTGCACAAGAATGGTGGGGTGCTGGATTGGTTGATGAGGTTCAGGATTGGGTTAGGAGCTGCAAGGGGGCTTGCATGGCTGCACCATGGCTGCCACCCTCCCATTATACAGCAGAACATTTGCTCCAATGTGATTCTTGTTGACGAGGAGTTTGATGCTCGGTTGATGGACTTTGGGCTAGCCAGGCTCATGGCTTCAGACTCAAATGGTAGTTTTGTGAATGGAGATTTGGGGGAGATTGGTTACATAGCTCCGGAGTATCCAAGTACTTTGGTTGCTTCATTGAAAGGGGATGTGTATGGTTTTGGTGTTTTGCTTTTGGAGTTGGTGACAGGGCAAAAGCCACTTGATGTTAGCAATGGGGATGAAGAGTTCAAGGGTAGCTTGGTGGATTGGGTGAACATGCATTCTAGTTTGGGAAGGATCAAGGATTGCATTGATAAAGCCATATGTGGAAGAGGGCATGATGAGGAGATTCTTCAGTTTCTGAAAATTGCTTTGAATTGTGTGGTTTCACGCCCCAAAGATAGGTGGTCTATGTACCAGGTTTATCATTCTTTAAAGGGTTTATCTAAAGATCAGAGTTTCTTTGAACATGATGACGATTTTCCCTTAATCTTTGGTAAGCCAGAAAACGAGGCAGGGCAGTAG 1821 0.4767 MDRSYTFSSSFLLLTLLGFHVFLASSQVEDDVKCLRGIKEAVLDPQGHLSPWRFDNTTVGFICDFVGVTCWNQRENRVLSLDFQDFKLSGRIPEALQYCGKSLQRLNLASNSFSSEIPHEICKWMPFLVALDLSGNQLSGPIPPTLVNCSYLNELMLSDNQLSGSIPFELGSLSRLKKFSVANNRLSGTIPEFFHGFEREGFEGNSGLCGGPLGSKCGGMSKKNLAIIIAAGVFGAAASLLLAFGLWWWYHLGGKKKKKGYGVGSSVGAAGDWALRLRGYKLVQVSLFQKPIVKVKLGDLMAATNNFSGQNVLFATRTGTTYKADLPDGSTLAVKRLSACRIGEKQFGMEMNRLGQVRHPNLAPLLGYCVVEEEKLLVYKHMSNGTLYSLLHKNGGVLDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARLMDFGLARLMASDSNGSFVNGDLGEIGYIAPEYPSTLVASLKGDVYGFGVLLLELVTGQKPLDVSNGDEEFKGSLVDWVNMHSSLGRIKDCIDKAICGRGHDEEILQFLKIALNCVVSRPKDRWSMYQVYHSLKGLSKDQSFFEHDDDFPLIFGKPENEAGQ* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0197 606 PANTHER - 13 598 - -
Vra1g0197 606 SUPERFAMILY Protein kinase-like (PK-like) 284 577 IPR011009 -
Vra1g0197 606 PANTHER OS07G0107800 PROTEIN-RELATED 13 598 - -
Vra1g0197 606 Gene3D Transferase(Phosphotransferase) domain 1 382 598 - -
Vra1g0197 606 Pfam Protein tyrosine and serine/threonine kinase 328 520 IPR001245 GO:0004672|GO:0006468
Vra1g0197 606 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Vra1g0197 606 ProSiteProfiles Protein kinase domain profile. 307 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0197 606 Gene3D Ribonuclease Inhibitor 28 219 IPR032675 -
Vra1g0197 606 Gene3D Phosphorylase Kinase; domain 1 268 381 - -
Vra1g0197 606 SUPERFAMILY L domain-like 27 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0197 Vra-Chr1 2361706 2364150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0197 11 603 Receptor kinase-like Gene Family AT3G28450 63.062 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vra1g0197 PK_Tyr_Ser-Thr 1.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0197 - - gmx:100810378 1001.89