Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0191 ATGGGTGGTGGCAGTGATAGTGCTGATAATGGTGATAGAGGTGATGCTGACCATAACAATTCTATTTCCATGGTTGTTAAGAACAAGAAGAGTGGCTCTATTCGGTCCATTTTTATGCATGCTGATGGCCTAGACATGTTTCTCATGATTTTCGGATTGATTGGAGCCATTGGTGATGGCTTAGGCACCCCTTTGGTGTTGTTTATCACCAGCAAAATCATGAACAATATTGGAAATTTTTCTGGTGGAATAGATAGCACTTTCCTCCACACAATCAATAAGAATGCTCTGGTTTTGTTATACTTGGCTTGTGGGTCTTTTGTTGCTTGTTTTCTAGAGGGTTATTGTTGGACAAGAACCGGTGAAAGACAAGCTGCTAGAATGAGAGTGAGGTACCTCAAGGCAGTGTTGAGGCAAGAAGTCGCGTACTTTGATTTGCATGTCAGTAGCACATCCGAGGTCATCACCAGTGTCTCTAATGACAGCCTCGTAATTCAGGATGTTATTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCCTCTATGTTTGTGGGGAGCTACATAGTGGGTTTTGCATTATTATGGAGATTGACCCTTGTGGGGTTCCCTTTCGTGGTTCTACTTGTGATCCCTGGTTTTATGTATGGGAGGACACTAATGGGGTTGGCCAGCAAGATGAGAGAAGAGTACGAAAAGGCTGGTACAGTGGCAGAACAAGCAATATCTTCCATCAGAACAGTTTACTCCTTTGTTGGGGAAAGCAAAACCATAGATGCTTTCTCTAATGCTCTACAAGGTTCAGTAAAGTTAGGACTCAGACAAGGCTTAGCAAAAGGCATAGCTATCGGAAGCAATGGTGTTGTGTTTGCTATATGGGCTTTCATATCGTATTATGGTAGCAGAATGGTCATGTACCACGGTGCCAAAGGTGGAACTGTGTTTGCAGTTGGAGCAGCCATAGCACTTGGAGGATTGGCCTTAGGTGCTGGTTTGTCGAACGTGAAGTACTTGTCGGAGGCAAGCACGGCAGGAGAACGAATAATGGAAGTGATAAAAAGGGTTCCGAAGACCGATTCAGACAACATGGGAGGGGAGATTCTGGAGGATGTTTGTGGGGAAGTTGAGTTTGAGGATGTGAAGTTTGTGTACCCTTCGAGGCCTGACAGTGTGATTCTGAAGGAGTTCAGCCTGAGGGTTCCTGCAGGGAAAACAGTGGCACTGGTGGGAGGAAGTGGGTCAGGAAAATCCACAGTGATATCTCTTCTGCAGAGATTCTATGACCCAGTTGAGGGAGAGATACGTGTTGATGGTGTGGCCATTCACAGGTTGCAACTCAAGTGGTTGAGGTCTCAAATGGGGTTGGTGAGTCAAGAGCCTGCACTCTTTGCAACCACCATTAAAGAGAATATACTGTTTGGAAGAGAAGATGCAACTGAGGAAGAGATTCTTCAAGCTGCAAAAGCTTCCAATGCTCATAATTTCATCTCACAGTTGCCAGAAGGATATCATACTCAGGTGGGAGAGAGAGGAATTCAAATGTCAGGGGGACAAAAGCAAAGAATTGCTATAGCACGAGCAGTAATAAAGAAGCCACGAATTCTGTTGTTAGATGAAGCAACGAGTGCCCTAGATTCTGAATCCGAACGAGTTGTGCAAGAAGCATTGGACAAAGCAGCAGTGGGGCGCACCACGATCATCATTGCTCATCGATTATCCACCATAAGAAACGCAGATGTCATTGCTGTGGTGCAAAGTGGGAAGATCATGGAAATGGGGTCACACCATGAACTCATCCAAAACGACAATGGCCTCTACACCTCTCTAGTTCGTCTGCAACAGGCAAAAGACGAAAGAGAAGACACCCCTTTTCACCCTCTTCCTCCTCCTTCATCATTATCATCTTCATCGATATCAAACAAGGACAATCACAACACAAGCAGTCGTAGGTTGTCTCTTGTGAGTCGATCCAGTTCTGCCAACTCAATCCCTCGTGGTGATGATGTTGTTGAAGATGTTGTGGAAGAAGATATGAAACTGCCACTTCCATCCTTTCGAAGATTGCTGGCAATGAATATTCCTGAGTGGAAGCAAGCATGTATGGGGTGTTTGAATGCAGTGTTGTTTGGTGCAGTACAACCTGTGTATGCATTTTCAATGGGGTCGATGATATCTGTTTACTTTCTCCCAGACCATGGTGAGATTAAAGAGAAAACCAGGATCTACTCCCTTTGTTTTCTAGGGTTGGCTGTGTTCTCCTTGGTGGTTAACATCCTCCAACACTATAACTTTGCTTACATGGGAGAGTACCTAACCAAAAGGATCAGAGAACGAATGCTTTCCAAGATACTCACTTTTGAAGTTGGATGGTTCGATCAAGATGAAAATTCCACCGGTGCTGTTTGTTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGGTCTTTGGTGGGAGACAGAATGGCTCTAGTGGTGCAAACCATTTCTGCAGTGGTGATAGCTTTCACTATGGGACTAGTCATTGCATGGAGGTTGGCCATTGTTATGATAGCGGTTCAACCGATTATCATAGCCTGCTTTTACACAAGGCGTGTCCTTCTCAAGAGCATGTCTAGCAAGGCCATCAAGGCGCAAGATGAAAGTAGCAAGATAGCTGCTGAAGCTGTTTCCAACCTCAGAACCATCACGGCATTTTCTTCCCAAGAGAGGATCCTGAAGATGCTTGAAAAGGCACAAGAGGGACCAAGTCATGAAAGCATTCGGCAGTCATGGTTTGCAGGTGTTGGTCTTGCCTGTTCCCAGAGCCTTACGTTTTGCACTTGGGCCTTGGACTTCTGGTATGGGGGAAAGCTTGTGTTCAAAGGGATCATCAGTGGCAAAGCATTGTTTGAGACCTTCATGATCTTAGTGAGCACAGGCAGGGTCATTGCAGATGCTGGCAGCATGACCAATGACCTTGCCAAAGGTTCTGATGCTGTGGGTTCAGTTTTTGCAATCCTAGATAGGTACACAAAAATTGAGCCTGATGATGAGACAGATGGACACAAGCCTGAAAAATTAACTGGGAAAATAGAGCTTCATGATGTCCATTTTGCATACCCAGCCAGGCCTAATGTGATGATCTTCCAAGGCTTCTCAATCAGAATAGATGCAGGCAAATCAACAGCATTGGTAGGGCAAAGTGGTTCTGGAAAATCAACAATAATAGGGCTAATAGAGAGATTCTATGACCCACTAAAAGGGATAGTGACCATAGATGGTAGAGACATAAAACAATATCACCTTAGGTCACTGAGGAAGCACATTGGTCTGGTGAGCCAAGAGCCAACATTGTTTGCTGGGAGCATAAGGGAAAACATTGCATATGGAGCATGTGACAAGGTTGATGAAAGTGAGATCATAGAAGCAGCAAGAGCTGCAAATGCTCATGACTTCATTGCAAGTCTGAAGGATGGATATGAAACATGGTGTGGAGATAGAGGAGTGCAACTCTCAGGGGGTCAGAAGCAGAGAATTGCAATAGCAAGAGCCATACTGAAGAATCCTGAAGTGCTGTTGCTGGATGAAGCCACCAGTGCTCTTGATAGCCAGTCAGAGAAATTGGTGCAAGATGCTCTAGACAGGGTGATGGTAGGAAGAACCAGTGTGGTGGTGGCTCACAGGTTAAGCACAATACAGAACTGTGATCAAATTGCTGTGCTAGACAAGGGAAAAGTGGTGGAGAAAGGGACTCATTCATCTTTGTTGGCTCAGGGACCAAGTGGAGCTTATTACTCTTTGGTGAGTTTGCAAAGAAGACCAACAAAACATGAAGGTTAA 3813 0.4479 MGGGSDSADNGDRGDADHNNSISMVVKNKKSGSIRSIFMHADGLDMFLMIFGLIGAIGDGLGTPLVLFITSKIMNNIGNFSGGIDSTFLHTINKNALVLLYLACGSFVACFLEGYCWTRTGERQAARMRVRYLKAVLRQEVAYFDLHVSSTSEVITSVSNDSLVIQDVISEKVPNFLMNASMFVGSYIVGFALLWRLTLVGFPFVVLLVIPGFMYGRTLMGLASKMREEYEKAGTVAEQAISSIRTVYSFVGESKTIDAFSNALQGSVKLGLRQGLAKGIAIGSNGVVFAIWAFISYYGSRMVMYHGAKGGTVFAVGAAIALGGLALGAGLSNVKYLSEASTAGERIMEVIKRVPKTDSDNMGGEILEDVCGEVEFEDVKFVYPSRPDSVILKEFSLRVPAGKTVALVGGSGSGKSTVISLLQRFYDPVEGEIRVDGVAIHRLQLKWLRSQMGLVSQEPALFATTIKENILFGREDATEEEILQAAKASNAHNFISQLPEGYHTQVGERGIQMSGGQKQRIAIARAVIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQSGKIMEMGSHHELIQNDNGLYTSLVRLQQAKDEREDTPFHPLPPPSSLSSSSISNKDNHNTSSRRLSLVSRSSSANSIPRGDDVVEDVVEEDMKLPLPSFRRLLAMNIPEWKQACMGCLNAVLFGAVQPVYAFSMGSMISVYFLPDHGEIKEKTRIYSLCFLGLAVFSLVVNILQHYNFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLVIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQDESSKIAAEAVSNLRTITAFSSQERILKMLEKAQEGPSHESIRQSWFAGVGLACSQSLTFCTWALDFWYGGKLVFKGIISGKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDETDGHKPEKLTGKIELHDVHFAYPARPNVMIFQGFSIRIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGIVTIDGRDIKQYHLRSLRKHIGLVSQEPTLFAGSIRENIAYGACDKVDESEIIEAARAANAHDFIASLKDGYETWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALDRVMVGRTSVVVAHRLSTIQNCDQIAVLDKGKVVEKGTHSSLLAQGPSGAYYSLVSLQRRPTKHEG* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0191 1270 CDD ABC_6TM_Pgp_ABCB1_D2_like 688 1004 - -
Vra1g0191 1270 Gene3D - 364 613 IPR027417 -
Vra1g0191 1270 SUPERFAMILY ABC transporter transmembrane region 45 358 IPR036640 GO:0005524|GO:0016021
Vra1g0191 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1022 1259 IPR003439 GO:0005524
Vra1g0191 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 612 IPR027417 -
Vra1g0191 1270 CDD ABC_MTABC3_MDL1_MDL2 374 612 - -
Vra1g0191 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1013 1262 IPR027417 -
Vra1g0191 1270 Gene3D - 1012 1269 IPR027417 -
Vra1g0191 1270 ProSitePatterns ABC transporters family signature. 513 527 IPR017871 GO:0005524
Vra1g0191 1270 Pfam ABC transporter 1042 1190 IPR003439 GO:0005524
Vra1g0191 1270 Pfam ABC transporter 392 541 IPR003439 GO:0005524
Vra1g0191 1270 MobiDBLite consensus disorder prediction 616 665 - -
Vra1g0191 1270 MobiDBLite consensus disorder prediction 630 663 - -
Vra1g0191 1270 Pfam ABC transporter transmembrane region 49 316 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g0191 1270 Pfam ABC transporter transmembrane region 700 967 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g0191 1270 MobiDBLite consensus disorder prediction 1 20 - -
Vra1g0191 1270 CDD ABC_MTABC3_MDL1_MDL2 1022 1262 - -
Vra1g0191 1270 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 34 1266 IPR039421 -
Vra1g0191 1270 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 347 - -
Vra1g0191 1270 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 34 1266 - -
Vra1g0191 1270 Gene3D ABC transporter type 1, transmembrane domain 37 990 IPR036640 GO:0005524|GO:0016021
Vra1g0191 1270 ProSitePatterns ABC transporters family signature. 1162 1176 IPR017871 GO:0005524
Vra1g0191 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 705 986 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g0191 1270 SMART AAA_5 401 675 IPR003593 -
Vra1g0191 1270 SMART AAA_5 1049 1242 IPR003593 -
Vra1g0191 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 374 610 IPR003439 GO:0005524
Vra1g0191 1270 SUPERFAMILY ABC transporter transmembrane region 680 1005 IPR036640 GO:0005524|GO:0016021
Vra1g0191 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 339 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0191 Vra-Chr1 2232648 2239579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0191 23 1263 Calmodulin-binding Proteins AT2G36910 45.000 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0191 K05658 - gmx:100807709 2137.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0191 1 2232648 2239579 Vra1g0191 1 2232648 2239579 ECH