Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0190 ATGGAACAAGGACAAAACCAAAGCACTCCCCAGAGAGCTTCCATGGATGATGCCTTACATTTTCTGAATAGAGTGAAAGATGTGTTTTGGGACCAAATGGAGAAGTATGACATGTTGCTTCAGATCCTGAAAGATTACAAGGATGAAAGGATTACCTGTGCTGTTGTGGCTGCAAGGGTGGAGGAGTTACTGAGAGAGCACCCCACTCTGATTTTGAGATTCAACAATTTCTTGCCAAAGGAGCATGAGATCAAACTTAAGCACGAACCTCGTCAAGAATTAGTCCGTTTAGTTGACAACATAAAGGAACGATTCAAAAAAGATCAGGATGCTTACGCATCATTCTTGGAGAGTATGAAATCCTACAAAGAAGATAAGCGAAAGACCTCTTGTGATCTTCATGGGGAGATTGCTATCATTTTTAAGGACCATCAAGATCTGCTTGATGAGTTCACCAGATTAATCCCTAATTATGATGCAATTGGCGTTGAAGAGACTGGTCGTGATGAAAAGGGAACACTGAGCATTCCCAACTGCAAGCAAACATGTTTAGGTTGTTTTACTGCATTGTTGTTTTGTACAATGATATGGTCACTGATATTTGTTTACTTTCTCTCATATCACGATGAGATAACAAGGAAAACAAAGATATGTTCGTTTTGCTTCCTAGGTTTGGTTCTAATGATCGCTAACATCTTCCACCGACCCTATAACATTTTTTGCATAAGAAAGTATTTAACTAAAAGGGTGAGAGAGGGATTGCTCTCAAAGATTCTTGCCATTGGAGATGGATGGTTCTCTCAGAAGGAAACTTTCAGATGTGATCTTTGCCATAGATTTGCCGAAGAAAGTGTGGTTAAGCCTATGATGGGAGAGAAAATGAGTTTAGGGTTTCAAACAATTTGTGCAGTGGGAATAGGTTTGAGTGTGGGTCTTATGTTTTCATGGAAAGCAGCCATTGCAATGATTGTTGTTCAACTTGTTATCATTGTTTGCTTCTACAAAAGAGGTGTCTTCAAGATCATGAAGGTCCATGATGATTGA 1044 0.3946 MEQGQNQSTPQRASMDDALHFLNRVKDVFWDQMEKYDMLLQILKDYKDERITCAVVAARVEELLREHPTLILRFNNFLPKEHEIKLKHEPRQELVRLVDNIKERFKKDQDAYASFLESMKSYKEDKRKTSCDLHGEIAIIFKDHQDLLDEFTRLIPNYDAIGVEETGRDEKGTLSIPNCKQTCLGCFTALLFCTMIWSLIFVYFLSYHDEITRKTKICSFCFLGLVLMIANIFHRPYNIFCIRKYLTKRVREGLLSKILAIGDGWFSQKETFRCDLCHRFAEESVVKPMMGEKMSLGFQTICAVGIGLSVGLMFSWKAAIAMIVVQLVIIVCFYKRGVFKIMKVHDD* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0190 347 Coils Coil 345 347 - -
Vra1g0190 347 Pfam Paired amphipathic helix repeat 34 78 IPR003822 GO:0006355
Vra1g0190 347 Pfam Paired amphipathic helix repeat 110 152 IPR003822 GO:0006355
Vra1g0190 347 PANTHER SIN3B-RELATED 3 163 IPR039774 GO:0003714
Vra1g0190 347 SUPERFAMILY PAH2 domain 8 80 IPR036600 GO:0006355
Vra1g0190 347 ProSiteProfiles PAH domain profile. 84 158 IPR003822 GO:0006355
Vra1g0190 347 Gene3D Paired amphipathic helix 17 79 IPR036600 GO:0006355
Vra1g0190 347 Gene3D Paired amphipathic helix 95 156 IPR036600 GO:0006355
Vra1g0190 347 Gene3D ABC transporter type 1, transmembrane domain 171 345 IPR036640 GO:0005524|GO:0016021
Vra1g0190 347 SUPERFAMILY ABC transporter transmembrane region 186 335 IPR036640 GO:0005524|GO:0016021
Vra1g0190 347 ProSiteProfiles PAH domain profile. 11 81 IPR003822 GO:0006355
Vra1g0190 347 SUPERFAMILY PAH2 domain 95 156 IPR036600 GO:0006355
Vra1g0190 347 Pfam ABC transporter transmembrane region 194 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0190 Vra-Chr1 2221578 2223903 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0190 14 89 WRKY Transcription Factor Family AT4G12020 40.789 2.90e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra1g0190 ABC_membrane 2e-08 CL0241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0190 K05658 - var:108345401 626.706