Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0188 ATGAAGAGGACAAGGGATGATATGTACTCTGCCTCTGCCTCTCAATTCAAACGCCCCCCTTTTTCTTCATCGCGTGCTGATTCCTATGGACAAGTCCCTGGAAATGGAGGGGGAGGGGGTGGAGGAGGTAGCAATGGAGCTGGTGTTGGTGGGGGAGCAACTACATCCCAGAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAGGTCAAAGACATGTTTCAGGACCAAAGAGAGAAGTACGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACAGCTGGTGTCATAGCAAGGGTGAAGGAATTATTCAAAGGGCACAACAATTTGATTTTTGGGTTTAACACATTCCTGCCTAAAGGTTATGAGATAACATTGGATGAGGATGAGGCTCCTCCCAAGAAAACAGTTGAATTTGAAGAAGCAATCAGTTTTGTGAACAAGATAAAGAAACGGTTCCAAAGTGACGAGCATGTTTACAAATCATTCTTGGACATTTTAAACATGTATCGCAAAGAGCACAAGGACATTGGCGAGGTTTATAGTGAGGTTGCCACCCTCTTCAAGGACCATCGAGATCTGCTTGAGGAGTTCACTAGATTCTTACCGGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATAGTCGAAATTCATTGCAGCGCTTTAATGAGCGGAGTTCTACAGCCCCAATGATGCGCCAAATGCCACCAGACAAGGCACAACGTTATCGAAGGGACAGACTTCCTTCTCATGATCATGATATGAGTGCTGAACGTCCTGAGATGGATGATGACAAAACAATGTTGAACATACACAAGGAGAGGAAGCGAGACAGTAGGGATAGGAGAATGCGTGATCAGGATGAGAGAGAACAAGATCTTGATAACAGCAGGGATTTGAACTTGCAACGCTTTCCGGACAAAAAGAAATCTGTCAAGAAGGCTGAAGGTTTTGGAATGGCTTCTGACTTTCCTTCTTATGAAGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGCTGAGCAGTTCTGATGATTACCAGACATTCTTGAAATGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCAGATCTTATGGATGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATCGATGGATTCCTTGCTGGTGTCATGAGTAAAAAATCACTATCTACTGATGCTCATTTGGCAAGACCGTCAAAGTTGGAGGACAAAGACAGAGAGCACAAGCGTGATATGGATGGAGCCAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATCCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACAGGCTTTTGCCTGCAGATTATCCAATTCCTACAGCTAGTCAGAGATCCGAGCTTGGTGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGGAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTACTAGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTATAATAACATTAATGAAAACAAAATCAGTGTGGAGACTCTGAACCGTGTTGAAGAGCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGACTCTATGGTGATCATGGTCTTGACGTAATAGACATATTGCGGAAAAACCCAACCCATGCCCTTCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTGGATCATCGTAGCTTCTATTTCAAACAACAAGATTCTAAGAATTTGAGCACAAAATCTTTGGTTGCCGAGATTAAAGAAATTAAAGAAAAACAGCAGAAAGAGGATGATATTATTCAGTCTATCGCTGCGGGAAATAAACAGCCTCTAATTCCTCATTTGGAATTTGAATATCCTGATGCTGCTGGGATTCATGAAGACCTGTATAAACTTGTTCGATATTCATGTGAGGAGTTATTCTCAAGTAAAGAGTTGTTAAATAAAATTATGAGGCTGTGGAGTACCTTTTTGGAGCCAATGCTTGGTGTTCCTACCCAGTCTCATGCAACAGAAAGGACAGAGGATAGAAAAACTGGGCATAATGTTCGAAATTTTGGTGTACCAAGCATAGGGGGTGACAGAAGCCCTCACGGAGACTCTCTTTCAATGAATTCAAGGTTACCAAAATCTGATAAGAATGAAGCTGATGGTAGACTAACTGACACAAAGAATGTTCACCGGGCTAATATGGCAACCAACGATAAAGAAAATGGATCTGTTGGTGGTGAACACGGTTGTAGGGATGATCCATTGATGGAGAAAGGACTGAAAAATGTAGAATGCAATGACAAAGCCTCCGGGTTTAGCAAACCATTTACCTCTGATGATCAAGGTGCTAAAAACAGTGTGTCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGGACCAACTTAGCTGCATCACCAGCGCGTGCCCTTACTCCATCACAACCAACTGATGTTGATGATTCTGTAGCCAAGTCTCAGGTTGCTAATGTACCATTGGTGGAGGGATGTGACATGGCAACTCCAGTACCTGTGGCCAATGGTGTTTTAAGTGAAAGCATTAAAGTTAAAAATCACGATGAATCTGCTGGGCCTTGCAAAATTGAAAAGGAAGAGGGAGAATTATCACCAAATGGTGACTCGGAGGAGGATAACTTTGTTGCCTATAGAGATTCAAATGTGCAGTCAATGGCTAAAGCAAAACACAACACTGAAAGAAGAAAGTATCAGTCTAGAAACGGAGAGGATGAATGTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCTGACGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTTCGGGAAGATCATGAAGAGGAGGAAGATATCGAACAAGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATCTGTGATGCACAAGCTGGAGGAGATGGCACATCTTTGCCATTGTCAGAAAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGGAGTTTCATTTGTTGAAGAAATGAAGGATTCAAGGGTGTTCTATGGAAATGATGACTTCTATGTGCTTTTTAGACTTCATCAAACTCTTTATGAGAGGATCTTATCAGCAAAAACAAATTCAATGAACGCAGAACTAAAATGGAAAGCAAAAGATGCTAGCTTACCAGATCCTTATTCAAGATTTATGAATGCATTGTACAACTTGTTGGATGGATCTGCTGAAAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATAGGGAACCAATCATACGTGTTATTCACCTTGGACAAGTTAATATACAAATTGGTTAGACAGCTTCAAACTGTTGCAACCGATGAGGTCGACAGTAAGCTTCTCCAATTATATGAATATGAAAGGTCTCGGAAGCCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCACGAGGATAATATATATCGGATACAATGTTCCTCTAGCCCTTCACGACTATCCATCCAGTTTATGGACAATATGAATGAAAAGCCTGAATTGTTTGCCGTTTCTATCGATCCAAATTTCTCCTTTTATCTGCACAATGATTTTCTATCTGTCTTTCCCGGCAAAAAGGAACCCCATGGCATCATACTGCACAGAAACAAACGCAAATATGGAAACTTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGACTTCTTCTTCCGGCCGAGAAAGAGGAGACGAATGCCGGCAGGGACAACAACTTCCCAGTTTCGTAGGGACAGAGAGGAAAGATTCCGCAAATTGTTGGAATGCTCGTAA 4176 0.414 MKRTRDDMYSASASQFKRPPFSSSRADSYGQVPGNGGGGGGGGSNGAGVGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRFNERSSTAPMMRQMPPDKAQRYRRDRLPSHDHDMSAERPEMDDDKTMLNIHKERKRDSRDRRMRDQDEREQDLDNSRDLNLQRFPDKKKSVKKAEGFGMASDFPSYEDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLARPSKLEDKDREHKRDMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKRAEELYNNINENKISVETLNRVEEHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYPDAAGIHEDLYKLVRYSCEELFSSKELLNKIMRLWSTFLEPMLGVPTQSHATERTEDRKTGHNVRNFGVPSIGGDRSPHGDSLSMNSRLPKSDKNEADGRLTDTKNVHRANMATNDKENGSVGGEHGCRDDPLMEKGLKNVECNDKASGFSKPFTSDDQGAKNSVSIAIRGENSLNRTNLAASPARALTPSQPTDVDDSVAKSQVANVPLVEGCDMATPVPVANGVLSESIKVKNHDESAGPCKIEKEEGELSPNGDSEEDNFVAYRDSNVQSMAKAKHNTERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEQDDVDGKAESEGEAEGICDAQAGGDGTSLPLSERFLSSVKPLTKHVSGVSFVEEMKDSRVFYGNDDFYVLFRLHQTLYERILSAKTNSMNAELKWKAKDASLPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEVDSKLLQLYEYERSRKPGKLNDSVYHANAHVILHEDNIYRIQCSSSPSRLSIQFMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILHRNKRKYGNLDELSAICSAMEGVKVINGLECKISCNSSKISYVLDTQDFFFRPRKRRRMPAGTTTSQFRRDREERFRKLLECS* 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0188 1391 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1380 - -
Vra1g0188 1391 MobiDBLite consensus disorder prediction 431 455 - -
Vra1g0188 1391 MobiDBLite consensus disorder prediction 211 238 - -
Vra1g0188 1391 Gene3D Paired amphipathic helix 339 412 IPR036600 GO:0006355
Vra1g0188 1391 PANTHER SIN3B-RELATED 1 1380 IPR039774 GO:0003714
Vra1g0188 1391 MobiDBLite consensus disorder prediction 246 316 - -
Vra1g0188 1391 MobiDBLite consensus disorder prediction 211 316 - -
Vra1g0188 1391 SUPERFAMILY PAH2 domain 55 126 IPR036600 GO:0006355
Vra1g0188 1391 MobiDBLite consensus disorder prediction 979 1074 - -
Vra1g0188 1391 Gene3D Paired amphipathic helix 140 212 IPR036600 GO:0006355
Vra1g0188 1391 ProSiteProfiles PAH domain profile. 57 127 IPR003822 GO:0006355
Vra1g0188 1391 MobiDBLite consensus disorder prediction 8 30 - -
Vra1g0188 1391 MobiDBLite consensus disorder prediction 942 967 - -
Vra1g0188 1391 SMART hdac_interact2seq4b 474 574 IPR013194 -
Vra1g0188 1391 Pfam Sin3 family co-repressor 476 568 IPR013194 -
Vra1g0188 1391 MobiDBLite consensus disorder prediction 1003 1023 - -
Vra1g0188 1391 ProSiteProfiles PAH domain profile. 141 211 IPR003822 GO:0006355
Vra1g0188 1391 MobiDBLite consensus disorder prediction 754 805 - -
Vra1g0188 1391 MobiDBLite consensus disorder prediction 433 455 - -
Vra1g0188 1391 SUPERFAMILY PAH2 domain 138 210 IPR036600 GO:0006355
Vra1g0188 1391 Pfam Paired amphipathic helix repeat 80 124 IPR003822 GO:0006355
Vra1g0188 1391 Pfam Paired amphipathic helix repeat 164 208 IPR003822 GO:0006355
Vra1g0188 1391 Pfam Paired amphipathic helix repeat 363 407 IPR003822 GO:0006355
Vra1g0188 1391 Gene3D Paired amphipathic helix 63 125 IPR036600 GO:0006355
Vra1g0188 1391 MobiDBLite consensus disorder prediction 942 958 - -
Vra1g0188 1391 MobiDBLite consensus disorder prediction 1 55 - -
Vra1g0188 1391 Pfam C-terminal domain of Sin3a protein 1111 1358 IPR031693 -
Vra1g0188 1391 MobiDBLite consensus disorder prediction 983 1002 - -
Vra1g0188 1391 SUPERFAMILY PAH2 domain 344 410 IPR036600 GO:0006355
Vra1g0188 1391 MobiDBLite consensus disorder prediction 1039 1059 - -
Vra1g0188 1391 Coils Coil 547 567 - -
Vra1g0188 1391 ProSiteProfiles PAH domain profile. 341 410 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0188 Vra-Chr1 2183058 2193445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0188 42 160 WRKY Transcription Factor Family AT4G12020 49.167 2.16e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra1g0188 Sin3a_C 2.4e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0188 K11644 - gmx:100807181 2420.97