Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0175 ATGGATTTTGTTCTAAATTACCTGAACACCACTACCATTGGACTTCTTTCTCTATTTCTCTTTTGTTTAATTTTGTACAATCCCTTCAAAAAATTTAAAGGAAAAGAGGCTCCTAGGGTTGCAGGAGCATGGCCAATACTGGGTCACCTTCCACTGTTGAGTGGTCCAAACGCACCCCACAGAACTTTGGGTGCTTTGGCTGAAAAATATGGAGCAATCTTCACCATCCAACTTGGTTCCAAAAAGGCTTTGGTGATCAACAGCTGGGAAATAGCAAAGGAATGCTTCACCACAACAGACATGGTGGTTTCCTCTCGCCCCAAACTTGTCGCCATTGAACTCATGGGCTATAACCATGCCATGTTTGGCTTTGCACCCTATGGTCCCTATTGGCGCGAGCTACGAAAGATTACAACTTTAGAGATCCTTACCCCTCGTCGAGTGGAACAACTGCAGCATGTTCGTGTCTCCGAAGTTCAAAACTCGATCAGAGAGTTGTATACTCTTTGGTGTAGTCAAAAGGGTGAGTCTGGCTATGCCTCGGTTGAGCTGAAGCAATGGTTTTCTCACTTGACATTCAACATGGTTCTTAGAATGCTCGTCGGGAAGAGATATTTTGGTGGTGAGAACGTGGACGACGAGAAGGCACAGAGATGTGTGANGGCTGTGGAGGAATTCCTGCGTCTGTTGGGTGTGTTCGCAGTGGGAGATGCTATTCCTTGGATGAGATGGCTTGATTTTGGAGGCCATGAGAAGGCAATGAAAGAAACCGCCGAAGACTTGGATATTGTTTTATGTGAGTGGTTAGAGGAACATAAACAAAAGAAGGGTTTGGGTGAGAAGGTTGATGAAGTTCAAGATTTCATGGATGTCATGATTTCCTTCCTTGATGGAAGAACTATTGATGGGTTTGATTCAGATACCGTTATCAAATCCACTATTCTGGCACTGATTGCAGGAGGAAGTGGCACAAGTAATATTATTCTTACATGGACAATATATTCAATCTTGAGAAATCCTTTGGTATTGCAAAAAGTAAAAGCCGAATTAGACATTCATGTTGGAAAAGAGAAATTGGTGAGTGAGGATGATATAAGTAATTTAAAATATCTTCAAGCTACCGTCAAAGAAACTTTAAGATTGTATCCTCCTTCTCCTCTTTTGCCACCTCGTGAATTCACAGAAAATTGCACTTTAAGTGGTTATAACATAGAAAAAGGAACTCGTCTAATCACAAATGTTTGGAAGATTCAAACAGATAGTAATATTTGGGAAGATCCATTAGAGTTCAAACCAGAAAGGTTTTTAACAACTCATAAAGAAATTGACATGAGAGGTCATCATTTTGAGTTATTGCCATTTGGAAGTGGTAGAAGAATTTGTCCTGGAATAACCTTTGGCCTTCAAATGGTGCATTTCAATCTTGCTACTCTTTTGCATTCTTTTGAAGTTCTAAGTTCATCACCTGATCTTACCTCTGAATTAATCGACAGCAGTATCATTCCCCTTGAGATTCTTATTAAACCACGTCTATCTTTTAGCTGTTATGAGAACAACTTATCCTTATGTTAA 1572 0.4033 MDFVLNYLNTTTIGLLSLFLFCLILYNPFKKFKGKEAPRVAGAWPILGHLPLLSGPNAPHRTLGALAEKYGAIFTIQLGSKKALVINSWEIAKECFTTTDMVVSSRPKLVAIELMGYNHAMFGFAPYGPYWRELRKITTLEILTPRRVEQLQHVRVSEVQNSIRELYTLWCSQKGESGYASVELKQWFSHLTFNMVLRMLVGKRYFGGENVDDEKAQRCVXAVEEFLRLLGVFAVGDAIPWMRWLDFGGHEKAMKETAEDLDIVLCEWLEEHKQKKGLGEKVDEVQDFMDVMISFLDGRTIDGFDSDTVIKSTILALIAGGSGTSNIILTWTIYSILRNPLVLQKVKAELDIHVGKEKLVSEDDISNLKYLQATVKETLRLYPPSPLLPPREFTENCTLSGYNIEKGTRLITNVWKIQTDSNIWEDPLEFKPERFLTTHKEIDMRGHHFELLPFGSGRRICPGITFGLQMVHFNLATLLHSFEVLSSSPDLTSELIDSSIIPLEILIKPRLSFSCYENNLSLC* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0175 523 PANTHER CYTOCHROME P450 82A2 1 517 - -
Vra1g0175 523 Pfam Cytochrome P450 38 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 Gene3D Cytochrome P450 30 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 SUPERFAMILY Cytochrome P450 43 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Vra1g0175 523 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0175 523 PANTHER CYTOCHROME P450 82C3-RELATED 1 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0175 Vra-Chr1 2049062 2051238 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0175 15 511 Cytochrome P450 AT4G31940 47.399 1.96e-168 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0175 - - gmx:100805047 770