Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0172 ATGGACTTTCTCCTAAATTGCTTAACCTTGAACACCACCACTCTTATTGCATCGTTTCTTTCTCTAATCTTGTTATTTTTCTATCTATATCGTAGAATTTCTTCTGAGAAACGGGCTCCAATAGTGAAAGGTGCATGGCCAATACTTGGTCATCTTTCACTGTTAAATGCTTCAAAAACACCCCATAGAACTTTAGGTGCTTTGGCTGACAAGTATGGACCCTTGTTCACCATCAAACTCGGTGTGAAAGAGGCTTTGGTGCTCAACAACTGGGAAATGTCCAAGGAACTCTTCACCACAAATGACCTTGCCGTTTCATCACGCCCTAAACTCGTTGCTATAGAAGTCATGTCCTACAACCAAGCCTTCGTAGGATTGGCTCCATACGGACCCTATTGGCGAGAGCTTCGAAAGATTGTGACTAATGAGTTTCTCTCCAACCGCAGAATAGAGCAACTCAGCCACATTCGTATCTCAGAGGTTCAAACCTCATTCAAAGAGCTCTACGATTTATGCTATATTAGTGTAAACAACAAGAAGGAGAATGAATCTAGTTATGGTGCTGCTACTTTGGTGGACATGAAAGAATGGCTTGAGCATTTGACTTTCAATATAATAGTGAGGATGGTGGTGGGGAAGAGGTACTTTGGTGTGGCGCATGTGGAGGGCAAGGAGAAGGCAGAAAGGTTTATGAAGAATTTAGATGAGTTCATGAATTTGATGGGCACTTTCACTGTGGCTGATGGGGTTCCTTGCTTGAGGTGGTTGGATTTGGGAGGCCATGAGAAGGCCATGAAAGCAACGGCTGAGGAAATGGACAAGCTGTTGAGTGAGTGGTTGGAAGAGCACCGTGAGAAGAATGGTTTGGGTGGAAAGGTTAAGGGCGATCAAGACTTCATGGATGTGATGATTTCAACACTTAATGGGGCTCCGATTCATGGGTTTGATGCTGATACCATTTGCAAAGCCACTACCCTGGAATTGATTTTGGGTGCAAGTGATTCAACTGCTGTTACTCTTACATGGGCACTTAGTCTGCTAGTACGAAATCCTCTTGCAATGGAAAAGGCTAAAGAAGAAATTGACATGCATATTGGGAAAGAGGGATACATAAGAGAATCAGATATAAGCAAACTTGTGTATCTTCAAGCCATAATCAAAGAGACATTGAGATTGTATCCACCAGCACCTCTTTCATCACCTCGTGTATTCACAGAAAATTGCATCTTAGGTGGCTACCACATAAAAAAGGGAACTCGACTAATGCATAACCTATGGAAGATCCAGAGAGACCCTAGTGTTTGGTCAGATCCATTAGAATTCAAACCAGAAAGGTTCATCACCACTCACCAACATGTGAATCTGAAAGGTCGACATTTTGAGTTGTTACCCTTTGGAAGTGGGAGAAGAATGTGTGTTGGAATGTCCCTTGGCTTAAACGTGCTTCATTTTACTTTGGCTAATATGTTGCATTCCTTTGACATCTCAAATCCTTCGACTGAACCTGTTGATATGACCGAGTTCTTTCGATTTGTCAATACCAGAGCTACTCCACTGAAGCTTTTGGTTAAGCCACGCCTACCTCCAAACTATTATGAATCTTTTTAA 1608 0.4235 MDFLLNCLTLNTTTLIASFLSLILLFFYLYRRISSEKRAPIVKGAWPILGHLSLLNASKTPHRTLGALADKYGPLFTIKLGVKEALVLNNWEMSKELFTTNDLAVSSRPKLVAIEVMSYNQAFVGLAPYGPYWRELRKIVTNEFLSNRRIEQLSHIRISEVQTSFKELYDLCYISVNNKKENESSYGAATLVDMKEWLEHLTFNIIVRMVVGKRYFGVAHVEGKEKAERFMKNLDEFMNLMGTFTVADGVPCLRWLDLGGHEKAMKATAEEMDKLLSEWLEEHREKNGLGGKVKGDQDFMDVMISTLNGAPIHGFDADTICKATTLELILGASDSTAVTLTWALSLLVRNPLAMEKAKEEIDMHIGKEGYIRESDISKLVYLQAIIKETLRLYPPAPLSSPRVFTENCILGGYHIKKGTRLMHNLWKIQRDPSVWSDPLEFKPERFITTHQHVNLKGRHFELLPFGSGRRMCVGMSLGLNVLHFTLANMLHSFDISNPSTEPVDMTEFFRFVNTRATPLKLLVKPRLPPNYYESF* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0172 535 SUPERFAMILY Cytochrome P450 45 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 Gene3D Cytochrome P450 33 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 465 474 IPR017972 GO:0005506|GO:0016705
Vra1g0172 535 PANTHER CYTOCHROME P450 82C3-RELATED 1 534 - -
Vra1g0172 535 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 PRINTS E-class P450 group I signature 462 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 PRINTS E-class P450 group I signature 472 495 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 PRINTS P450 superfamily signature 463 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 PRINTS P450 superfamily signature 472 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 Pfam Cytochrome P450 45 513 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0172 535 PANTHER CYTOCHROME P450 82A3 1 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0172 Vra-Chr1 1988898 1990859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0172 13 527 Cytochrome P450 AT4G31940 46.286 3.56e-168 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0172 - - gmx:100789386 840.876