Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0165 ATGGCATCAGGCGGAACCGAAGCCTTTCCAGATTTGGGTAAACACTGCCAGCACAGCGATTGCCACCAACTCGATTTTCTTCCTTTCACATGCCAAGGTTGCCAAAAGGTGTTTTGTTTGGAGCACAGATCCTTTAAGTCCCACGCGTGCAAGAATTCCGACCACAACAGCAGAAAAGTGGTTGTCTGCGAAACGTGTTCCATGTCCATTGAGACCACAGGATATGTGGGACAGGAAGAGGATGCAATCTTGAAGAAGCACCAAAAGTCTGGGAACTGTGATCCCACCAAGAAGAAGAAACCCATTTGCCCTGTCAAGCGCTGCAAGGAGGTTTTGACTTTCTCCAACACCAGCACCTGTAAAACTTGCCACATTAAGGTGTGCCTCAAGCACCGTTTCCCTGCTGATCATGCTTGCAGCAGAGGAGTTTCAGCTTCTTCCTCCTCTGTTGCTGATGGTGGATGGAAGAATCGATTTTTGGCTGCTTTAGGTTCAAGGGCTGGACAGAACTGTGCCAAAACTGGTTCATCTCGTTCTACCTCTCCTCCTAGCACTCCTTCTGTCAAGGCCTATTGA 576 0.4878 MASGGTEAFPDLGKHCQHSDCHQLDFLPFTCQGCQKVFCLEHRSFKSHACKNSDHNSRKVVVCETCSMSIETTGYVGQEEDAILKKHQKSGNCDPTKKKKPICPVKRCKEVLTFSNTSTCKTCHIKVCLKHRFPADHACSRGVSASSSSVADGGWKNRFLAALGSRAGQNCAKTGSSRSTSPPSTPSVKAY* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0165 191 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Vra1g0165 191 SUPERFAMILY AN1-like Zinc finger 9 59 IPR035896 -
Vra1g0165 191 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 6 180 - -
Vra1g0165 191 Gene3D - 2 69 IPR035896 -
Vra1g0165 191 SUPERFAMILY AN1-like Zinc finger 95 143 IPR035896 -
Vra1g0165 191 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Vra1g0165 191 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Vra1g0165 191 MobiDBLite consensus disorder prediction 169 191 - -
Vra1g0165 191 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Vra1g0165 191 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 6 180 - -
Vra1g0165 191 Gene3D - 78 154 IPR035896 -
Vra1g0165 191 Pfam AN1-like Zinc finger 103 140 IPR000058 GO:0008270
Vra1g0165 191 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0165 Vra-Chr1 1921726 1922906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0165 1 171 C2H2 Transcription Factor Family AT3G28210 59.649 8.86e-75 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0165 - - gmx:100500384 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0165 1 1921726 1922906 Vra1g0165 1 1921726 1922906 ECH