Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0164 ATGGAGATTCAACAATCGCTGAAGCTCACCATCCACAAGAAATGGCCATCGTCACCAAAGAAAACACCAAAAGATTCAGAACCGATAAACACCACTGCAACTCCCAAGCTCAAATGGAAGAAAATCTTCTTTCACACTAAAACCAAACCCAAAATCCAAACCCCCCCAGATGAGTTCCTCTGCCCCGTTTCCCGTTCCCTCATGTTCGACCCCGTCATCGTCTCCTCCGGCCACTCCTTCGAACGCTCCTCCGTCGAAGCCTGTAAAAATCTCAACTTTACACCACAACTCCCCGACGGCACTACCCCCGATTTCTCCACCCTCATCCCCAACCTCGCCCTTAAATCCGCCATCCTCAAGTGGTGCCACACCACCCACACACCCCCTCCTCTACCCCACAACAACCTCGTGCAGCAAACCTCCATCTCCCCTGACACGAAACTAGTACAGCAGACCTCGATTTCCCCAGACACCCCCACCTTAAACCTCGTACAAACCTCGATCTCCCCTACCATAGAAGAAAAGCTCTCCCACAGAGATCCGATCCTGGATTCCCTGGACGAAAACCCACCCTCCAGCAACCTCCGCCGCCACGCGGAAACCGAGGTGCCCATAAGACCGACGCATCTGTACACGAGCTCGGAGGAATCCATAGCTACATCCTCGGCCTCGACGCCGCCGTTTCAACTCGCCACGCGCCCCAGTTGCTGCTACTATTCTTCCCCTTCCTCGTCAGAAATCGAACCTGCCGCAACGCCAGAAGAAGAAGAAATCACAGGGAAGCTCAAAAGCTCACAACAGAACATAATCGAGGAAGCGCTTCTCTCTCTGAGAAAACTCACCCGAGTGAGAGAAGAAACCCGGGTTCAACTCTGCACTCCGCGGATACTCTCTGCGTTACGCTCCCTCGTGTTGTCGAAACACGTGAACGTTCAGGTGAACGCTTTGGCTTCATTGGTGAACCTTTCTCTGGAGAAGAGTAACAAAGTGAAGATCGTGCGGTCGGGGATGGTGCCACCGTTGATCGAGGTTCTGAAATTCGGATCCCCTGAGGCGCAGGAACACTGTGCTGGCGCGTTGTTCAGTTTATCTCTCGAAGACGATAACAAAACCGCCATTGGTGTTCTGGGTGGTTTGGGTCCGCTGCTTCAGATGCTCCGAGTCGAGAGCGAGCGGACTCGGCACGACTCGGCCTTGGCGCTTTACCATTTGTCTTTGGTTCAGAGTAACCGGTCCAAGATGGTTAAACTCGGTTCGATTCCGGTTCTTTTAAGTATGGTTAAATTGGGTCACATGACGGGCCGGGTTTTATTGATCTTGGGGAACTTGGGTTCCGGGTCGGATGGACGGGCCGCGATGTTGGATGCGGGTGTTGTGGAGTGTCTGGTCGGGTTGCTGAGTGGACCCGACTTGGCTACCGGATCGACTCGGGAGAGTTGTGTGACGGTGATGTACGCGTTGAGTCACGGCGGTTTAAGATTTAAGGCGGTGGCAAAGGCGGCGGGGCTGGTGGAGGTGTTGCAGAAGGTGGAGAAAGTGGGGAGTGAGAGGGCTAGGCATAAGGTGAGAAAGATTTTGGAGATGATGAGGGCCAAGGAGGTGGAGGAGGAAGATGTGGATTGGGAAGAGTTGCTAGACTCGGGGCTGGGTTGTCGGACTCGGGGCCGACTCGGTGGCGGGTTGGACGAGTCGAGTGCTAACTCGGCCGAGTTTTGA 1716 0.5431 MEIQQSLKLTIHKKWPSSPKKTPKDSEPINTTATPKLKWKKIFFHTKTKPKIQTPPDEFLCPVSRSLMFDPVIVSSGHSFERSSVEACKNLNFTPQLPDGTTPDFSTLIPNLALKSAILKWCHTTHTPPPLPHNNLVQQTSISPDTKLVQQTSISPDTPTLNLVQTSISPTIEEKLSHRDPILDSLDENPPSSNLRRHAETEVPIRPTHLYTSSEESIATSSASTPPFQLATRPSCCYYSSPSSSEIEPAATPEEEEITGKLKSSQQNIIEEALLSLRKLTRVREETRVQLCTPRILSALRSLVLSKHVNVQVNALASLVNLSLEKSNKVKIVRSGMVPPLIEVLKFGSPEAQEHCAGALFSLSLEDDNKTAIGVLGGLGPLLQMLRVESERTRHDSALALYHLSLVQSNRSKMVKLGSIPVLLSMVKLGHMTGRVLLILGNLGSGSDGRAAMLDAGVVECLVGLLSGPDLATGSTRESCVTVMYALSHGGLRFKAVAKAAGLVEVLQKVEKVGSERARHKVRKILEMMRAKEVEEEDVDWEELLDSGLGCRTRGRLGGGLDESSANSAEF* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0164 571 Gene3D - 435 540 IPR011989 -
Vra1g0164 571 SUPERFAMILY RING/U-box 52 124 - -
Vra1g0164 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 137 IPR013083 -
Vra1g0164 571 ProSiteProfiles U-box domain profile. 54 128 IPR003613 GO:0004842|GO:0016567
Vra1g0164 571 PANTHER U BOX DOMAIN-CONTAINING 36 560 - -
Vra1g0164 571 Gene3D - 255 434 IPR011989 -
Vra1g0164 571 SMART Ubox_2 58 121 IPR003613 GO:0004842|GO:0016567
Vra1g0164 571 SMART arm_5 366 406 IPR000225 GO:0005515
Vra1g0164 571 SMART arm_5 284 324 IPR000225 GO:0005515
Vra1g0164 571 SMART arm_5 446 489 IPR000225 GO:0005515
Vra1g0164 571 SMART arm_5 325 365 IPR000225 GO:0005515
Vra1g0164 571 Pfam Armadillo/beta-catenin-like repeat 328 364 IPR000225 GO:0005515
Vra1g0164 571 MobiDBLite consensus disorder prediction 1 31 - -
Vra1g0164 571 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Vra1g0164 571 SUPERFAMILY ARM repeat 260 525 IPR016024 -
Vra1g0164 571 Pfam U-box domain 56 124 IPR003613 GO:0004842|GO:0016567
Vra1g0164 571 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 36 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0164 Vra-Chr1 1907635 1909908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0164 56 571 U-box Gene Family AT5G40140 55.810 4.30e-175 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0164 - - gmx:100798675 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0164 1 1907635 1909908 Vra1g0164 1 1907635 1909908 ECH
Vra1g0164 1 1907635 1909908 Vra4g0971 4 16804162 16809569 PCT