Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0163 ATGCCAGCCCACAGTGTCCCACCGCACACATCCCGTGACCATACTCCCACTCTCACACTCTCGCGTGTTTCTCACTCTTCGTCACTTCCAACAAAACCCCTTCAACTCAACACTTTACTTCACTCTCTCTGTCTTTGTTTTGGTTTCTCAGTTTCTACAATGTCTTCGTTTTCTCTTACGTTTCTCACATTATTATCGTTCTTTTGTTTCTGCGTTAACGCGCGTCTAACGTTGGACTTCTACAAGGACACGTGTCCGCAGTTCGCGCAGATCATCCGCGACACGGTGACGGCGAAGCAGATCGCGAGTCCCACCACGGCGCCCGCCACAATCCGCCTCTTCCTCCACGACTGCCTCCTCCCAAATGGCTGCGACGCCTCCATCCTCCTCTCCTCCACGGCGTTCAACAAGGCGGAGCGCGACGCCGACATCAACCTCTCCCTCCCCGGCGACGCCTTCGACCTCGTCGTCCGCGCCAAGACCGCCCTCGAACTGGCCTGCCCCAACACCGTCTCCTGCGCCGACATCCTCTCCGCCTCCACCCGCGACCTCCTGACCATGCTCGGCGGCCCCTTCTACCCCGTTTTCCTCGGGCGTCGTGACGGCCGCTTCTCCTCCGCCGCCTCCGTCCCCAACCACCTCCCCACTCCATCCATGCCCATGTCCCAAATCACGGAAATCTTCACCCGGCGCGGGTTCTCCGTGGAGGAGTTCGTCGCTCTGAGTGGGGCCCACACCGTGGGATTCTCCCACTGCTCCGAATTCGTCAGCAACCTCTCGAACTCGTCTTCTTCCTACAACCCTCGTTTTTCTGAAGCTTTATCCAAAGCTTGCGCCGATTACAGAACCAACCCTACCCTTTCCGTCTTCAATGACATCATGACTCCCAACAAGTTCGACAATGTGTACTTCCAGAACCTTCCTAAGGGTTTGGGCGTGCTGAAATCCGATCACGGCTTGTACAGTGACCCTGTTACGAGACCATTCGTGGAGGGCTTCGCCAAGGATCAAGCTAGGTTCTTTAGGGTTTTTGCCTCCGCGATGCAGAAGCTGAGTCTCCTCAATGTGCAGACGGGGAGAAAGGGGGAGATCCGACGCAGGTGTGATCAGATTAATTGA 1119 0.5666 MPAHSVPPHTSRDHTPTLTLSRVSHSSSLPTKPLQLNTLLHSLCLCFGFSVSTMSSFSLTFLTLLSFFCFCVNARLTLDFYKDTCPQFAQIIRDTVTAKQIASPTTAPATIRLFLHDCLLPNGCDASILLSSTAFNKAERDADINLSLPGDAFDLVVRAKTALELACPNTVSCADILSASTRDLLTMLGGPFYPVFLGRRDGRFSSAASVPNHLPTPSMPMSQITEIFTRRGFSVEEFVALSGAHTVGFSHCSEFVSNLSNSSSSYNPRFSEALSKACADYRTNPTLSVFNDIMTPNKFDNVYFQNLPKGLGVLKSDHGLYSDPVTRPFVEGFAKDQARFFRVFASAMQKLSLLNVQTGRKGEIRRRCDQIN* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0163 372 Gene3D - 79 368 - -
Vra1g0163 372 Gene3D Peroxidase, domain 2 215 351 - -
Vra1g0163 372 PANTHER - 57 372 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Plant peroxidase signature 85 104 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Plant peroxidase signature 109 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Plant peroxidase signature 151 164 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Plant peroxidase signature 170 180 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Plant peroxidase signature 189 204 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Plant peroxidase signature 236 248 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Plant peroxidase signature 290 305 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Plant peroxidase signature 306 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Plant peroxidase signature 346 359 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 CDD secretory_peroxidase 76 371 IPR033905 GO:0004601|GO:0042744
Vra1g0163 372 PANTHER PEROXIDASE 31 57 372 - -
Vra1g0163 372 SUPERFAMILY Heme-dependent peroxidases 76 372 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 ProSiteProfiles Plant heme peroxidase family profile. 75 372 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Haem peroxidase superfamily signature 107 121 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Haem peroxidase superfamily signature 171 188 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Haem peroxidase superfamily signature 189 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 PRINTS Haem peroxidase superfamily signature 292 307 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0163 372 Pfam Peroxidase 95 336 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0163 Vra-Chr1 1894728 1896135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0163 74 372 Peroxidase AT3G28200 67.224 1.91e-153 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0163 K00430 - gmx:100817030 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0163 1 1894728 1896135 Vra1g0163 1 1894728 1896135 ECH