Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0155 ATGCATGGGTGTGGTGGTGACCAGTGGAAACACAATCGGCACATGTGGCCTGTATCTGCTAACGCGACCACTGATGGACGCAAGATTCGCGCTGGTGATTGTGCACTCTTCAAGCCACCTAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGCTATCTTATGATAAACAAGAAAGTCCAAGTTTAGAAGTACATTGGCTTTACCGACCTGCTGATTTAAAACTTGCTAAAGGAATTGTGCTGGAAGCTGCACCGAACGAAGTTTTTTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTCGACGAGTTTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAGGACTACCTTAATGAACAACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAGCATCAACACAGTCTTTGAAATCTGGTTCTGACAACATACAAAATAGTTCTTCGTTTGGTGCACAGAGTAAGGGTAAAAAGAGAGAGCGGGGTGATCAGGGTTCTGATTCATCTAAAAAGGAGCGGTTATTTAAGATAGAAGATGGAGATTCTGGTCAGTTTAGACCGGAGAGCATGTTAAAGTCCGAGATTGCTAAAATAACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAAACTGGTACAGCTTATGCAGCCTGACAGTGCTGATAAAAAGATTGATTTACCTGGGCGGATAATGCTTGTTGATGTAATTGCACTTACAGACCGGTACGACTGTCTGGGCTGGTTTGTACAGCTTAGGGGTTTACCTGTATTGGACGAATGGCTGCAGGAGGTCCACAAGGGCAAAATTGGTGATGGAAATCCCAAAGAAAGTGACAAGTCTGTTGATGATTTTTTATTAGCTTTACTGCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTGCAGACCTGTAATGTTGGAAAGTCTGTCAATCATTTACGCACGCACAAGAATGCTGAAATTCAGAGGAAAGCCCGGAGTTTAGTGGACACATGGAAGAGGCGTGTGGAAGCTGAAATGAACATGAATGATTCAAAGTCTGGTTCAAACCGTGCTGTTTCTTGGCCAGCAAAGCCAGCAAACTCGGAGTCTCCTCATGTTGGAAATAGGAAAACAGGTGGGTCCTCTGATAACGTCGTGAAGAGCTCTGTAATTCAACCCTCATTATCTAAAAGTTCCCAATCTAAGTTAAGTTCTGGAGAAGCTTTGTCGAAGTCTTCATCTCCTGGCTCTACTAAATCATTGACTACCCCCGCAGGCGTGAACTCAAAAGATCAAAACAGTAAATTCTTTGTTGGAGCTGCAACCTCAGATCTACCTTTGACACCTATCAAAGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAATAACAGTATAACTTGTTCTAGTGAACATGCTAAGACTATTGGTTCTTGCAAGGAAGATGCAAAGAGCTCCACTGCGGTGTCAATGAGTGGAAGTAAAATTCATGGTTGTACATCTCGAATTCGCAAGTCAAGCAATGGTGTACATGGGGCTGGTGCTGCAGTAGGTCAAAAGGAGCACAACTCTGCTAAACATTCAACCAGAAATTCACCTTCTGAGAAAGTATCACCAACTCGAGCATCCCATGAAAAATCAGTTGACCAGGCCATTGCCGATCAAGGGAATAACCAGCGATTGATTCTTAGGTTGCCAAACACTGGTCGCAGTCCATCAAGGGGGGCTAGTGGGGGCTCTTTTGAAGAACCAGCTACAACGAGCAGCAAAGCTTCATCTCCTGCAGACCGGAATGATAATCAGGACAGAAGAGTGAAAACTAAGGCCGAGTGTTTGCTGACCCATGTGTCAAATATGATGAATGAGGCTTGTGATGCTAATGATGCTTTGATTGGTGATGAAGGTAAGGGTACTCCAATAGTTGATGAGCGAAGCAGGACAAATGAAGATAGTGATAAGGTATTGGAAACACCAAAGCCAACTAGTTTGCCATCTGGGTTTGTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTAGTTGAAAGCTGTGTAAAGTTTTCTGAAGCAAGTTCATCCGTTTCCCATGGAGATGATGGGATGAACCTACTAGCTACTGTGGCTGCTGGGGAAATATCCAGATCAGAAAATGCGTCACCTGTGGCATCCCCCGAGAGAAAGTCTCCTGCAGCAGATGAAATGTGCTCAGGCAATGATTTGAAGTTAAAGCATTCTGGTGAAGCAGCTGTTCGCACCCTTTCAGAGTTGAATGGTAGGGCTACAGGAGAGCATCCTTTGAATACAGTTGATTCATTGCAGATAAAAAATGAGTTGAGGCATCCTGCCATGACTCTGTCACGTGATTTTTCAGGGGATGGTGAAACCATTTCATCTTCCCATGACACTAACATACATGTCTCCCCTACGAATTTGTCACAAAATGTTGAAGGTCCATGCTTACGGCCCGAAACCAAAGAAAATGCTTCTGTCACTATACTGACAGCTAAAAAGGAGAGTAATGCAGACACTGGAGTTTCAGACTCTAAATTATTGCCAAGGGCCTACTCTTTGGATGATGATCAGAAGGTTGATCACATGAATGAGGAGATCATTGAGGATGAGAAAATGTTGGTTTCAAAACCTGTTACAAATGTTGAGTCTGAAAACGAATCTGGTGAAAAGCAGCCGGAGTTAACTTCAGGTGTGGATAATGAGAACCAGATTAGTGTGGAGAAAGCAATTGGTACTGGAATACTAGTGGAAAAGGCCTCTCCAATTGCTGAAAACTGTGAGTCTGCATATTTAAAAAAGGAGTCACCTGCTTCTGGCAGTGCTTTAATTGTACCCAAGGATGAAAGTGCTGATGACATGAAGTCAGTTGTGATTGAGCCTGATGTAAGACCAATGGAGCAAGATTCTTCTGCTCCAGATGATTCTAATGAATGTGCTGAAGTTAATATGGGCAAAAAAGAAACCATTCGTCCGTGTTCTGGTTCTTCAGTTCAGCCTGATTTACAAGCAATGCCTAGGACAGAGAGTGAAGTGTCCAAATCATGTGAGCAAAAGCTAGATGCAAGTCTGTCTGAAGTATCAGGAGAGAGGCATGCATGCTCTGCAGCTGGTGCTGATGCAGCTGTAAAGCTTGACTTTGATTTAAATGAAGGCTTTCCTGTTGATGATGTAAGCCAAGGGGAGATTGCCAGACAGGATGATCCTATCACATCATCTGCAGTTCATGTTCCTTGCCCATTGCCTTTTCCTATTTCGTCCATCTCTGGTGGCTTCCACCCTTCAATTACCATTGCATCCGCGGCTAAAGGGCGGCCCGTTATTCCACCAGAAAATCCATTGAGGATCAAGGGGGAGCTTGGATGGAAAGGATCTGCAGCCACCAGTGCATTTCGACCAGCTGAACCTAGGAAAAATGCTGAGATGCAGTCCTCTACTAATGATATTAGTTCTGTTGATGTCACTTCTATTAAACAAAATCGTGCCCCCTTAGATTTTGACTTGAATGTGGCAGATGAAAGATGTTTTGAAGATGTTGGTTCACATGGTTCTTTAGATTCTGGACCACATGATCGTAGTGTGGGACTTGATCTTGATTTAAACAGAGTTGATGAGACTCCTGAAATTGGTACTTTCTCTATAAGCAAACTGGATATCCCTGCTTTACCAAGCAAGCCGTCATTGTCTAGTGGGTTGTCTAATGGTGGAAGTGTCTCAAGAGACTTTGACTTAAATAACGGGCCTGGCCTTGAAGAAGTTGGTAGTGAAGTCCCTACACGTAGTCAGCAGCAGATGAAAAATTCTGTGCCGTTTCCAAGTGCTGTTCATAGCACGAGAACAAACAATGCTGAATATGGAAATTATTCTGCATGGTTTCCTCCGGGCAATTCCTATTCTGCAATTACTGTCCCGCCACTTCTATCTGGTAGAGGGGAGCAGAGTTATGTTACTGGCGCGGGGGCACAACGAATAATGGGTCCAACAGGTAGCACTCCTTTTGGTCCTGAAATCTACAGGGGATCTGTACTTTCATCCTCCCCGGCTGTTGCTTATCCATCCACTACAGCTTTTCCATATCCTGGATTTCCATTTGAAACCAATTTTCCATTATCCTCAAACTCCTTTTCTGGTTCAACTGCATTTATGGATTCGTCAAATGTGGGCGGGCTATGTTTTCCTACCATGCCTACACAGCCAGTTGGGCCTGGTGGTGTCGTTTCATCCACATATTCTCGTCCATATGTTATGAGTCTTCCAGGTGGTACTAGTAATGTGATACCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCAGGCCCTGGTTTAGCAGATACAGAACGGAGGGACGAAAGATTGCCTTCAGGATTGCGGCAAATGTCTGTCCCGAACCCACAAGCCTCAATCGAGGACCACTTGAAGATGTTTCAGATGGCAGGTGCTGCTGCATTGAAAAGAAAAGAGCCTGATGGTGGTTGGGATGCTGAAAGATTCGGTTATAAGCAACACTCACGGCAATAG 4695 0.4413 MHGCGGDQWKHNRHMWPVSANATTDGRKIRAGDCALFKPPRDSPPFIGIIRKLSYDKQESPSLEVHWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNEQQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPASTQSLKSGSDNIQNSSSFGAQSKGKKRERGDQGSDSSKKERLFKIEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVEKLVQLMQPDSADKKIDLPGRIMLVDVIALTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNPKESDKSVDDFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNAEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRAVSWPAKPANSESPHVGNRKTGGSSDNVVKSSVIQPSLSKSSQSKLSSGEALSKSSSPGSTKSLTTPAGVNSKDQNSKFFVGAATSDLPLTPIKEERSSSSSQSQNNSITCSSEHAKTIGSCKEDAKSSTAVSMSGSKIHGCTSRIRKSSNGVHGAGAAVGQKEHNSAKHSTRNSPSEKVSPTRASHEKSVDQAIADQGNNQRLILRLPNTGRSPSRGASGGSFEEPATTSSKASSPADRNDNQDRRVKTKAECLLTHVSNMMNEACDANDALIGDEGKGTPIVDERSRTNEDSDKVLETPKPTSLPSGFVSRSGQTYDASLSPMNALVESCVKFSEASSSVSHGDDGMNLLATVAAGEISRSENASPVASPERKSPAADEMCSGNDLKLKHSGEAAVRTLSELNGRATGEHPLNTVDSLQIKNELRHPAMTLSRDFSGDGETISSSHDTNIHVSPTNLSQNVEGPCLRPETKENASVTILTAKKESNADTGVSDSKLLPRAYSLDDDQKVDHMNEEIIEDEKMLVSKPVTNVESENESGEKQPELTSGVDNENQISVEKAIGTGILVEKASPIAENCESAYLKKESPASGSALIVPKDESADDMKSVVIEPDVRPMEQDSSAPDDSNECAEVNMGKKETIRPCSGSSVQPDLQAMPRTESEVSKSCEQKLDASLSEVSGERHACSAAGADAAVKLDFDLNEGFPVDDVSQGEIARQDDPITSSAVHVPCPLPFPISSISGGFHPSITIASAAKGRPVIPPENPLRIKGELGWKGSAATSAFRPAEPRKNAEMQSSTNDISSVDVTSIKQNRAPLDFDLNVADERCFEDVGSHGSLDSGPHDRSVGLDLDLNRVDETPEIGTFSISKLDIPALPSKPSLSSGLSNGGSVSRDFDLNNGPGLEEVGSEVPTRSQQQMKNSVPFPSAVHSTRTNNAEYGNYSAWFPPGNSYSAITVPPLLSGRGEQSYVTGAGAQRIMGPTGSTPFGPEIYRGSVLSSSPAVAYPSTTAFPYPGFPFETNFPLSSNSFSGSTAFMDSSNVGGLCFPTMPTQPVGPGGVVSSTYSRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGLADTERRDERLPSGLRQMSVPNPQASIEDHLKMFQMAGAAALKRKEPDGGWDAERFGYKQHSRQ* 1565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0155 1564 MobiDBLite consensus disorder prediction 598 643 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 396 411 - -
Vra1g0155 1564 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1562 - -
Vra1g0155 1564 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 296 404 IPR035441 -
Vra1g0155 1564 CDD TFIIS_I 316 391 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 495 652 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 1543 1564 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 177 204 - -
Vra1g0155 1564 SMART BAH_4 27 142 IPR001025 GO:0003682
Vra1g0155 1564 MobiDBLite consensus disorder prediction 845 870 - -
Vra1g0155 1564 Pfam BAH domain 29 134 IPR001025 GO:0003682
Vra1g0155 1564 MobiDBLite consensus disorder prediction 165 237 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 1301 1334 - -
Vra1g0155 1564 ProSiteProfiles TFIIS N-terminal domain profile. 308 393 IPR017923 -
Vra1g0155 1564 Pfam TFIIS helical bundle-like domain 341 390 IPR017923 -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 393 479 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 1312 1334 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 677 717 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 1486 1522 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 205 236 - -
Vra1g0155 1564 ProSiteProfiles BAH domain profile. 27 142 IPR001025 GO:0003682
Vra1g0155 1564 MobiDBLite consensus disorder prediction 1545 1564 - -
Vra1g0155 1564 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 259 394 IPR035441 -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 685 704 - -
Vra1g0155 1564 Gene3D - 19 240 IPR043151 -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 497 555 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 768 787 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 936 958 - -
Vra1g0155 1564 SMART TFS2_5 314 392 IPR003617 GO:0005634
Vra1g0155 1564 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 1562 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 1046 1068 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 1183 1204 - -
Vra1g0155 1564 MobiDBLite consensus disorder prediction 419 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0155 Vra-Chr1 1788186 1795232 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vra1g0155 BAH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0155 - - gmx:112998769 2476.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0155 1 1788186 1795232 Vra1g0155 1 1788186 1795232 ECH