Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0153 ATGTCGGAAGGGTTCGCGATCGAATTGTACTTCGATCCGGCGTTGGAGAATCAAATGCTGAAGGCGTGGAACGTTCTCGCGCGCCGACAAATCACCACTCACCTCATCGAGATGAAGTCGCGCCCTCACATAACGCTCTTCTCCGCCCCCTTTCTAGAACCTTCCAAGCTCGAATCGCTTCTCAGAACCTTCGCATCCAAGCACGATCCTCTTTTTCTCTCCTTCTCCTCCGTCGGCACCTTCCCCAACGACGCCGACAACCTTCTCTTCCTGGCGCCCACGCCCTCCCTCTCCCTCCTCCAATTCCAGTCCCACCTCTGCGACGCCATCAGAAAAGAAGGTATTGAGATCTCCGACGACTTCGCCTTCGATTCCTGGATACCTTACTGCTCGGTCGCACACCACGTCCCCAAAAACAGAATGCCCGAGGCTTTCTCTCTCTTGCGGGAACTCAAGCTTCCGGTTTCCGGTTACGCTACGGACATCGCGCTCGTGAAGTTCTCTCCGGTTAGCGAACTCTTTTCCTCTGTGCTCAGCAACAATGTAGATTCCTGA 555 0.5477 MSEGFAIELYFDPALENQMLKAWNVLARRQITTHLIEMKSRPHITLFSAPFLEPSKLESLLRTFASKHDPLFLSFSSVGTFPNDADNLLFLAPTPSLSLLQFQSHLCDAIRKEGIEISDDFAFDSWIPYCSVAHHVPKNRMPEAFSLLRELKLPVSGYATDIALVKFSPVSELFSSVLSNNVDS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0153 184 PANTHER - 1 182 - -
Vra1g0153 184 Pfam 2'-5' RNA ligase superfamily 39 166 - -
Vra1g0153 184 Gene3D Cyclic phosphodiesterase 6 173 - -
Vra1g0153 184 SUPERFAMILY LigT-like 5 166 IPR009097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0153 Vra-Chr1 1781911 1783047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0153 1 184 Calmodulin-binding Proteins AT5G40190 60.870 4.23e-77 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0153 - - pvu:PHAVU_004G019100g 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0153 1 1781911 1783047 Vra1g0153 1 1781911 1783047 ECH