Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0152 ATGTCGGAAGGGTTCGCGATCGAACTGTACTTGGATCCGGCGTTGGAGAATCAGGTGCTCAAGGCATGGAACGTTCTTGCGCGCCGACAAATCACCACTCACCTCATCGAGATGGAGTCGCGCCCTCACATAACGCTCTTCTCCACACCATTTCTAGAACCTTCCAAGCTCGAATCGCTTCTCAGAACCTTTGCATCCAAGCATGATCCTCTCTCTCTCTCCTTCTCCTCCGTCGGCACCTTCCCCAACCACGCCGACAACCTGCTCTTCCTGGCGCCCACGCCCTCCCTCTCCCTCCTCCAATTCCAGTCCCACCTCTGCGACGCCATCAGAAAAGAAGGTATTGAGATCTCCGACGACTTCGCCTTCAATTCCTGGATACCTTACTGCTCGGTCGCACACCACGTCCCCAAAAACAGAATGCCCGAGGCTTTCTCCCTCTTGCGGGAACTCAAGCTGCCGGTTTCCGGTTACGCTACGGACATCGCGCTCGTGCAGTTCTCTCCGGTTCGCGAACTCTTCTCCTTTGTGCTCGGTAATAATGTAGACTCCTGA 555 0.5532 MSEGFAIELYLDPALENQVLKAWNVLARRQITTHLIEMESRPHITLFSTPFLEPSKLESLLRTFASKHDPLSLSFSSVGTFPNHADNLLFLAPTPSLSLLQFQSHLCDAIRKEGIEISDDFAFNSWIPYCSVAHHVPKNRMPEAFSLLRELKLPVSGYATDIALVQFSPVRELFSFVLGNNVDS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0152 184 Pfam 2'-5' RNA ligase superfamily 41 166 - -
Vra1g0152 184 Gene3D Cyclic phosphodiesterase 5 180 - -
Vra1g0152 184 PANTHER - 1 182 - -
Vra1g0152 184 SUPERFAMILY LigT-like 5 165 IPR009097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0152 Vra-Chr1 1778663 1779633 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0152 1 184 Calmodulin-binding Proteins AT5G40190 63.043 5.18e-81 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0152 - - pvu:PHAVU_004G019100g 360.147