Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0146 ATGTTAGAAAGGATGTATCCTAGGTTGTTGGTTTTGGACCATACCCATTTGAAGATGGCATGGGTTAAGCATCAAATCCAGCAGAAAGATGGTTCCTTGAGCTACTCACCACCCCTTCTGTCTTCCTCTTCTTCTTCACCACCTCCTTACCCTCCTGGTGCTGCTTTCCACAAAGAATCACCACCTTCAACAGCAGCAACAGCATCATCTGGCACTAGAATTAGTCCTGCTGTTCTCTTCATCATAGTTGTTCTTGCTGTTTTGTTTTTCATCTCTGGCATCCTCCACCTGCTTGTTAGATTTCTCATAAAGTACCCATCTTCTTCTGCATCTGCTCAATCCAACAGACACCCGGAAATCTCCACATCTGATGCTCTCCAGCGGCAGCTGCAGCAGCTCTTCCATCTCCACGACTCTGGCTTGGATCAAGCTTTCATTGATGCTCTTCCTGTGTTTCAGTACAAGGAGATTGTAGGGTTGAAAGAGCCCTTTGACTGTGCTGTTTGTTTGTGTGAGTTTTCTGAGAAGGATAAGCTGAGGTTGTTGCCTATGTGCAGCCATGCTTTTCACATCAGTTGTATAGACACATGGCTTCTGTCAAACTCCACATGCCCTCTTTGCAGAGGAACGCTTCTCACTCAGGGATTTTCTATTGAGAACCCTATATTTGATTTTGATGATCTGAGGGAGGATGAAGGGTGTCCTTGTAATGGGGAGAGTGGATTCAGTACCAGACAGAAAACAGTGGTGGTTGAAGAAAGTGTGGAGAAAGGGGTTTTCCCTGTGAGGCTTGGGAAATTCAAGAAGCTGAATGTGGAGGGTGGGGAGAGAGAAGTTGGAGAGACAAGTAGCAGTAATTTGGATGCAAGAAGGTGCTACTCAATGGGGTCTTACCAATATGTGGTTGGCAATTCAGACCTGAGGGTGGCCTTAAACCATGAAATTGATAAAGGTCAAAACACAAGACTCACCAAAGGAATGGCCCATGATGATGGGAAGTTTTCAGTGGAGGGGGATGTGGAAGCAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGCTTTTCTGTGTCAAAAATCTGGTTGTGGCCAAAGAAGGGGAAATTACCCTCTTCTTTGGATGCTCAAATGGCCATGCCAGTGCCATCTTTTCTAAACACAGATTTTCAAAGGAGGAGGGAAACAGAAGGGGCTTGA 1194 0.4539 MLERMYPRLLVLDHTHLKMAWVKHQIQQKDGSLSYSPPLLSSSSSSPPPYPPGAAFHKESPPSTAATASSGTRISPAVLFIIVVLAVLFFISGILHLLVRFLIKYPSSSASAQSNRHPEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTQGFSIENPIFDFDDLREDEGCPCNGESGFSTRQKTVVVEESVEKGVFPVRLGKFKKLNVEGGEREVGETSSSNLDARRCYSMGSYQYVVGNSDLRVALNHEIDKGQNTRLTKGMAHDDGKFSVEGDVEAKKISSVSKGDSFSVSKIWLWPKKGKLPSSLDAQMAMPVPSFLNTDFQRRRETEGA* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0146 397 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 19 376 - -
Vra1g0146 397 MobiDBLite consensus disorder prediction 36 68 - -
Vra1g0146 397 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Vra1g0146 397 SUPERFAMILY RING/U-box 145 214 - -
Vra1g0146 397 Pfam Ring finger domain 165 208 IPR001841 -
Vra1g0146 397 SMART ring_2 166 207 IPR001841 -
Vra1g0146 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 376 - -
Vra1g0146 397 MobiDBLite consensus disorder prediction 42 56 - -
Vra1g0146 397 CDD RING-H2_PA-TM-RING 165 208 - -
Vra1g0146 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 214 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0146 Vra-Chr1 1679678 1683581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0146 63 367 C3H Transcription Factor Family AT2G18650 40.476 9.21e-59 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0146 - - gmx:100806337 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0146 1 1679678 1683581 Vra1g0146 1 1679678 1683581 ECH