Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0143 ATGGATCTTGAGTCTGTTATCCGTAGGAACACAATTAAGGAAGAGTCATGGAAGACAGTGTTAACTTTGGCTTATCAAAGCTTGGGGGTTGTGTATGGAGACTTGAGCACTTCCCCACTTTACGTTTACAAAAGCACTTTCGCAGAGGATATTCAGCATTCAGATACCAATGAAGAAATCTATGGGGTGTTGTCTTTTGTTTTCTGGACGCTCACGCTGATTCCACTGCTCAAGTATGTGTTCATTGTGCTGAGAGCTGATGACAATGGTGAGGGAGGGACCTTTGCTCTCTACTCCTTGCTCTGCCGCCACGCTCGTGTTAGCTTGTTGCCTAACACTCAGCTTGCGGATGAGGACTTAACGGAGTACACCATAGACAATGGAACTGTTCCCATCAACAAGAAAAATGTTGGTTTGGGCTTGAAGAGCTTGTTGGAGAAATACAGGGTGCTGCAAAGGGTGCTGCTTGTTCTTGCCTTGATAGGAACTTGCATGGTTATTGGGGATGGTGTGCTCACACCAGCAATTTCTGTTTTTTCCGCTGTGTCAGGCTTGGAGCTTTCCATGTCCAAAGAACAACACAGATATGTGGAGGTTCCAGTGGCTTGTGTAATACTGGTGTTTTTGTTTTCCCTTCAACATTATGGCACTCACCGTGTGGGATGTCTCTTTGCACCTGTTGTCTTGACCTGGCTACTTTGTATCAGTGCTATTGGTATTTATAACATCTTCCATTGGAATCCACATGTTTATCAAGCTCTCTCCCCATATTACATGTTCAAATTTCTGAAAAAGACTCAAAAGGGAGGATGGATGTCCTTGGGTGGAATTCTACTTTGTATAACAGGTTCAGAAGCCATGTATGCTGACTTAGGACACTTTTCACAATTGTCAATTAAGATTGCATTCACCTTTTTGGTGTACCCTTCCTTAATCCTAGCATATATGGGACAAGCTGCATATCTTTCAAAGCATCATTCCCTTGAAAGTGATTATCGAATTGGGTTCTATGTATCAGTACCTGTAAAACTTAGATGGCCTGTTCTTGCAATAGCCATACTTCAAGCTGTGGTTGGAAGTCAAGCTGTCATCACAGGAACTTTCTCAATAATCAAGCAATGTTCTGCTTTAGGATGTTTCCCCAAAGTCAAAATCATCCACACATCATCCAAGACTCATGGCCAGATTTACATTCCTGAGATCAACTGGAGTTTGATGCTGCTTTGCCTGGCTATTACAGTTGGATTTAGAGATACTAAACGCATGGGAAATGCAGCAGGCTTGGCTGTTATAACTGTCATGCTGGTGACCACTTGCTTAATGTCTCTAGTTATAGTCTTATGTTGGCACAAAAGCATTTTGCTGGCAATTTGCTTCATATTGTTCTTTGGCTCCATTGAAGCACTCTATTTCTCAGCATCCCTTATCAAGTTCCTTGAGGGGGCTTGGGTCCCCATTGCCCTCTCATTCATCTTTCTCATTTCCATGTATGTATGGCATTATGGCACAATAAAGAAGTATGAGTTTGATGTTCAGAACAAGGTTCCAATCAACTGGCTCCTCAGTTTAGGCCCCACTCTAGGCATTGTCAGAGTCAAGGGAATTGGCCTCATACACACTGAGCTTGTATCTGGGATCCCAGCTATTTTCTCCCACTTTGTGACCAATCTCCCTGCCTTCCACCAAGTTGTTATCTTCCTCTGCATCAAGTCTGTCCAAGTGCCACATGTCAGACCAGAAGAAAGGTTCTTGGTGGGTAGAGTTGGCCCAAAGGAGTATAGGCTTTACAGGTGCATAGCCAGGTATGGCTACCGTGACATTCACAAGGATGACATGGAGTTTGAGAAGGATCTTGTGTGCAGCATAGCAGAATTCATCAGATCAGACACCTCAGAATATGGCCTAGGATTGGGAAGTTTTGAAGAAGACACTAAGATGACAGTTGTTGGAACTTCAGCATCAAACTTAGAGGGTTCAATAAGGATGTCTGAAGATGATCAACAACAAGATTCTCATATGGAAGGCCCCTCAGAATTGATGGAAGTTAAGCCTTCTCCAGAGAAAGTGAGGAAGAGAGTGAGGTTTGTTGTGCCAGACAGTCCACAGATTGATTTTGAAACAAGAGAGGAGTTGCTTGAGCTAATGGAAGCAAAAGAAGCTGGAATGGCATTCATTCTGAGTCACTCATATGTTAGAGCAAAAAGTGGATCAAGCTGGTTGAAAAAAGTTGTCATCAATTATGGATATGATTTCTTAAGGAGAAACTCTAGAGGACCAACATATGCTTTAAGCATACCTCATGCATCTACCTTAGAGGTAGGCATGATCTACCATGTATGA 2340 0.4291 MDLESVIRRNTIKEESWKTVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIQHSDTNEEIYGVLSFVFWTLTLIPLLKYVFIVLRADDNGEGGTFALYSLLCRHARVSLLPNTQLADEDLTEYTIDNGTVPINKKNVGLGLKSLLEKYRVLQRVLLVLALIGTCMVIGDGVLTPAISVFSAVSGLELSMSKEQHRYVEVPVACVILVFLFSLQHYGTHRVGCLFAPVVLTWLLCISAIGIYNIFHWNPHVYQALSPYYMFKFLKKTQKGGWMSLGGILLCITGSEAMYADLGHFSQLSIKIAFTFLVYPSLILAYMGQAAYLSKHHSLESDYRIGFYVSVPVKLRWPVLAIAILQAVVGSQAVITGTFSIIKQCSALGCFPKVKIIHTSSKTHGQIYIPEINWSLMLLCLAITVGFRDTKRMGNAAGLAVITVMLVTTCLMSLVIVLCWHKSILLAICFILFFGSIEALYFSASLIKFLEGAWVPIALSFIFLISMYVWHYGTIKKYEFDVQNKVPINWLLSLGPTLGIVRVKGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVIFLCIKSVQVPHVRPEERFLVGRVGPKEYRLYRCIARYGYRDIHKDDMEFEKDLVCSIAEFIRSDTSEYGLGLGSFEEDTKMTVVGTSASNLEGSIRMSEDDQQQDSHMEGPSELMEVKPSPEKVRKRVRFVVPDSPQIDFETREELLELMEAKEAGMAFILSHSYVRAKSGSSWLKKVVINYGYDFLRRNSRGPTYALSIPHASTLEVGMIYHV* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0143 779 MobiDBLite consensus disorder prediction 661 683 - -
Vra1g0143 779 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 779 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vra1g0143 779 Pfam K+ potassium transporter 25 606 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vra1g0143 779 PANTHER POTASSIUM TRANSPORTER 6 1 779 - -
Vra1g0143 779 TIGRFAM kup: potassium uptake protein 23 779 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0143 Vra-Chr1 1652907 1659524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0143 1 779 Inorganic Solute Cotransporters AT5G14880 76.709 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0143 K03549 - gmx:100793387 1480.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0143 1 1652907 1659524 Vra1g0143 1 1652907 1659524 ECH