Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0141 ATGGCTTCTAGAATTCTTTCCACCCTGCAGAATGTGTCTTCTTCTTCTACTTCTTCTTTTGTCTCAACCACTAAACAACGTTGTTTAGGCCTATGTTGTCTCTGGCGTAGAAGTTTAAGTGGAACTGGTGCTTCTGCTGCTGCTGATATAGAGCCTAGCAAACCACCAGTGCAAATTGAGCATAATCAGCTTCTGATTGATGGACTGTTTGTTGATGCAGCTTCTGGAAAAACTTTTCCAACCAATGATCCTAGGACTGGAGATACAATTGCCAATGTAGCCGAAGCGGATGTTGAAGATGTAAATCGTGCTGTACGTGCTGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAGGATGACAGCTTATGAAAGATCACGAATAATTTTGCGTTGTGCTGATATATTGGAGAAACACAATGATGAAGTTGCAGCAATTGAAACATGGGATAATGGGAAGCCGTATGAACAGGCTGCAAAAGTTGAAATACCTATGGTGGTACGGTTGTTCCGGTATTATGCAGGTTGGGCGGATAAAATTCATGGTTTAACAGTTCCAGCTGATGGACCATACCATGTTCAAACCTTGCATGAACCTATTGGAGTAGCAGGGCAGATTGTTCCTTGGAATTTCCCACTTCTTATTTTTTCATGGAAGGTTGCACCTGCATTAGCTTGTGGTAATACAGTTGTAATGAAAACTGCAGAACAGACACCACTTTCTGCCATTTATGTGTCAAAGCTATTTCATGAGGCAGGACTTCCTCCTGGAGTTCTGAATGTTATCAGTGGCTTTGGTCCTACTGCTGGGGCAGCTCTGTGTAGTCATATGGATGTTGACAAGCTTGCTTTCACAGGATCCTCTCAGACCGGTAGACGGGTATTAGAACTCTCAGCACGCAGTAACCTGAAGCCTGTAACTCTGGAGCTGGGTGGAAAATCTCCATTCATTGTCTGCAAGGATGCTGATATCGATGCAGCTGTTGAGGCAGCACATTCTGCATTATTCTTTAATCAGGGGCAATGTTGTTGTGCTGGTTCTCGCACATTTGTTCATGAAAGCATATATGATGAATTTGTGGAAAAGGCTAAAGCTCGTGCTACCAAACGTGTGGTTGGAGACCCTTTCAAAAGTGGGGTTGAGCAAGGTCCTCAGATTGATTTTGCACAATTCGAGAAGATCCTGAAATACATAAAATCAGGCATTGAAAGTGGTGCTACACTGGAATCCGGTGGTCAAAGAGTTGGCTCGAAAGGCTACTACATCGAACCAACTGTTTTCTCAAATGTTCAGGACGACATGTTGATAGCAAAAGATGAGATATTCGGTCCGGTACAATCTATCCTGAAATTCAAGGATCTAGAGGAGGTGATAAGAAGGGCCAATGCAACTCATTATGGCCTGGCTGCTGGAGTTTATACTCAGAATACAGACACTGCCAATACCTTGATGCGGGCATTGCGAGTTGGAACAGTATGGATCAACTGCTATGATGTCTTTGATGCAGCAATACCTTTTGGTGGATATAAAATGAGTGGTCAAGGGAGAGTAAGGGGAATCTACAGCCTTAGAAGCTACCTTCAAGTTAAAGCTTCTGTCACTCCTTTGAAGAATCCTGCATGGCTCTAG 1629 0.4371 MASRILSTLQNVSSSSTSSFVSTTKQRCLGLCCLWRRSLSGTGASAAADIEPSKPPVQIEHNQLLIDGLFVDAASGKTFPTNDPRTGDTIANVAEADVEDVNRAVRAARKAFDEGPWPRMTAYERSRIILRCADILEKHNDEVAAIETWDNGKPYEQAAKVEIPMVVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIVPWNFPLLIFSWKVAPALACGNTVVMKTAEQTPLSAIYVSKLFHEAGLPPGVLNVISGFGPTAGAALCSHMDVDKLAFTGSSQTGRRVLELSARSNLKPVTLELGGKSPFIVCKDADIDAAVEAAHSALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARATKRVVGDPFKSGVEQGPQIDFAQFEKILKYIKSGIESGATLESGGQRVGSKGYYIEPTVFSNVQDDMLIAKDEIFGPVQSILKFKDLEEVIRRANATHYGLAAGVYTQNTDTANTLMRALRVGTVWINCYDVFDAAIPFGGYKMSGQGRVRGIYSLRSYLQVKASVTPLKNPAWL* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0141 542 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 336 347 IPR016160 GO:0016491
Vra1g0141 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 314 503 IPR016163 GO:0016620
Vra1g0141 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 76 531 IPR016162 GO:0016491
Vra1g0141 542 Coils Coil 91 111 - -
Vra1g0141 542 CDD ALDH_F2BC 59 534 - -
Vra1g0141 542 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 29 542 - -
Vra1g0141 542 Pfam Aldehyde dehydrogenase family 70 531 IPR015590 GO:0016491
Vra1g0141 542 SUPERFAMILY ALDH-like 58 535 IPR016161 GO:0016491
Vra1g0141 542 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 308 315 IPR029510 GO:0016491
Vra1g0141 542 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE 29 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0141 Vra-Chr1 1610203 1614253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0141 1 542 Aldehyde Dehydrogenase Gene Family AT3G48000 71.771 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0141 K00128 - gmx:100798892 947.577