Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0138 ATGACAGTTATTATAACAGTGGTGCTAATATTTGTGGGATTTTTGGTCCTGATCATATTTCATGTTTGTATTTCGGAGAGACTCTCTAGGAGAGGATCTATGGTTGAGAGGGGTGCAAATGGGGGAAGAAGCATGTCCATAGATGAGTTGGAGAAGCTTCCATGTTATGATTATGTTGCCAAAGGCAACACAAGCAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAGCCTCATCACTGGAGATAAGTGCAGGTTGTTACCTATGTGCAAGCACAGTTTTCATGCTCAATGTGTGGATACATGGCTTCTTAAGACACCCTTATGCCCAATTTGCAGGTGTAATGCTCATTCTCACAGTGAAAACCAAGTTATAGGTAATAGTGACTACTTGGTAGTACCAAATAGTGTGTCTAGGGAGGGCCAAACTGCCGCAAGAAGTCAGCAACATGAGAACACGGTGGTCTTGGTACAGCTGAGAGAAAGCCTAGAAAATGGTCCATCAACAAATGTTGTCGTGGAAAATCCAACATTAGGAAGTCATAACTTGGTCAGAGAGGAGTAG 561 0.4332 MTVIITVVLIFVGFLVLIIFHVCISERLSRRGSMVERGANGGRSMSIDELEKLPCYDYVAKGNTSSPVDCAVCLESLITGDKCRLLPMCKHSFHAQCVDTWLLKTPLCPICRCNAHSHSENQVIGNSDYLVVPNSVSREGQTAARSQQHENTVVLVQLRESLENGPSTNVVVENPTLGSHNLVREE* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0138 186 Pfam Ring finger domain 69 112 IPR001841 -
Vra1g0138 186 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Vra1g0138 186 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 126 - -
Vra1g0138 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 126 - -
Vra1g0138 186 SMART ring_2 70 111 IPR001841 -
Vra1g0138 186 SUPERFAMILY RING/U-box 69 127 - -
Vra1g0138 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 117 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0138 Vra-Chr1 1603104 1604596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0138 50 132 C3H Transcription Factor Family AT2G18650 45.238 7.10e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0138 - K15692 gmx:102667575 304.293