Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0137 ATGGAGTCTGGACGGCTTTTCTTTGATGCCTGTGCTTCTCGCGGGAACACCAACATGCTCTTCCTCGGCAACACTGAACTCGCTTTCCGAGGGAGATCGATGATGAGCTTGGAGGAAGCCTCAAAGAGGCGACCTTTCTTCACCTCACCGGATGAACTGTATGACGAGGAGTATTATGAGAAGCAGATGCCGGAGAAGAAGCATCGCCTCAGTTCTGAACAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCTGAGAGGAAGACCCAGTTGGCCAAGAAGCTGGGATTGCAACCAAGGCAGGTAGCTGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAACAGCTCGAAAGGGATTTTGATGTTCTCAAGTCTTCATACGATACCCTACTTTCATCCTATGATTCACTTATGAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTGAAGCTAAAGAGGTGCCTGAGGAACCATTGTATGACAAGAAAGTTGATCCACTTCCGGTAGAAGATATAGCTTCAATTTTCAGCACAAGGGTGGAGGACCACCAGAGCAGTGGATCTGTTGGAAGTGCAGTGGTGGATGAGGGTAGTCCACAGCTGGTGGTTGACAGTGTTGATTCACACTTTCCGGCTGAGAACCCTGGTGGATGTGTTGGCCCAGTTGAAAGAGTTCAGTCAGAGGAGGATGATGGAAGTGATGATGGGAGGAGTTACATGGATGTGTTTGTGGTATCTGAAACTGAGAACCAAAACCATGAGGAAGGAGAGGGATTGGTTTGGTGGACCATATGTATTATGTTGGATAAATGA 858 0.4767 MESGRLFFDACASRGNTNMLFLGNTELAFRGRSMMSLEEASKRRPFFTSPDELYDEEYYEKQMPEKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDVLKSSYDTLLSSYDSLMKENEKLKSEVVSLNEKLQVEAKEVPEEPLYDKKVDPLPVEDIASIFSTRVEDHQSSGSVGSAVVDEGSPQLVVDSVDSHFPAENPGGCVGPVERVQSEEDDGSDDGRSYMDVFVVSETENQNHEEGEGLVWWTICIMLDK* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0137 285 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Vra1g0137 285 Pfam Homeodomain 66 119 IPR001356 GO:0003677
Vra1g0137 285 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Vra1g0137 285 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Vra1g0137 285 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Vra1g0137 285 SMART HOX_1 63 125 IPR001356 GO:0003677
Vra1g0137 285 MobiDBLite consensus disorder prediction 225 253 - -
Vra1g0137 285 Gene3D - 63 128 - -
Vra1g0137 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 257 - -
Vra1g0137 285 SUPERFAMILY Homeodomain-like 53 123 IPR009057 -
Vra1g0137 285 Coils Coil 134 168 - -
Vra1g0137 285 CDD homeodomain 66 122 IPR001356 GO:0003677
Vra1g0137 285 Pfam Homeobox associated leucine zipper 121 163 IPR003106 GO:0006355|GO:0043565
Vra1g0137 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 257 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0137 Vra-Chr1 1571948 1574875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0137 1 277 Homeobox Transcription Factor Family AT3G01470 56.184 8.84e-95 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra1g0137 Homeodomain 6.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0137 K09338 - gmx:100797836 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0137 1 1571948 1574875 Vra1g0137 1 1571948 1574875 ECH